| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,567,475 – 5,567,534 |
| Length | 59 |
| Max. P | 0.884789 |
| Location | 5,567,475 – 5,567,534 |
|---|---|
| Length | 59 |
| Sequences | 4 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 78.20 |
| Shannon entropy | 0.34488 |
| G+C content | 0.37535 |
| Mean single sequence MFE | -16.25 |
| Consensus MFE | -12.01 |
| Energy contribution | -11.20 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.884789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5567475 59 + 21146708 AUCCACAUUUAUGUACAUAUAUGUAUAUGUAUGUACGCUACUGCAUGGCGACAUGCAAA ............((((((((((....)))))))))).....((((((....)))))).. ( -19.50, z-score = -2.65, R) >droSim1.chr2R 4209230 55 + 19596830 AUCCACAUUUAUGUAUGCAUAUGUAUAUGUA----CGCUACUGCGUGGCGACAUGCAAA .........(((((((((....)))))))))----......((((((....)))))).. ( -15.20, z-score = -0.87, R) >droSec1.super_1 3184305 55 + 14215200 AUCCACAUUUAUGUAUACAUAUGUAUAUGUA----CGCUACUGCGUGGCGACAUGCAAA .........(((((((((....)))))))))----......((((((....)))))).. ( -15.20, z-score = -1.43, R) >droAna3.scaffold_13266 12853816 55 + 19884421 AUUCGAUUUCUUGCAUAUAUACAUAUAUAGA---GGGCUG-UGCGUGGUGAUAUGCAAA ..........((((((((...((..(((((.---...)))-))..))...)))))))). ( -15.10, z-score = -1.91, R) >consensus AUCCACAUUUAUGUAUACAUAUGUAUAUGUA____CGCUACUGCGUGGCGACAUGCAAA .........(((((((((....)))))))))..........((((((....)))))).. (-12.01 = -11.20 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:46 2011