| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,550,882 – 5,550,987 |
| Length | 105 |
| Max. P | 0.736933 |
| Location | 5,550,882 – 5,550,987 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 92.92 |
| Shannon entropy | 0.13985 |
| G+C content | 0.39234 |
| Mean single sequence MFE | -26.83 |
| Consensus MFE | -19.28 |
| Energy contribution | -19.28 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5550882 105 + 21146708 ------UCCGUUUUAUAG-------CUGGC-AAACAUUAUGGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUGCCGAGCACUUGACAGCAUACGAAAAGUCAGAAAACUAUGGCCAAU ------.((((.......-------(((((-....(((((.(((((.....)))))..)))))....((((((((...)))))))).............)))))......))))..... ( -28.32, z-score = -2.52, R) >droSim1.chr2R 4192950 105 + 19596830 ------UCCGUUUUAUAG-------CUGGC-AAACAUUAUGGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUGCCGAGCACUUGACAGCAUACGAAAAGUCAGAAAACUAUGGCCAAU ------.((((.......-------(((((-....(((((.(((((.....)))))..)))))....((((((((...)))))))).............)))))......))))..... ( -28.32, z-score = -2.52, R) >droSec1.super_1 3167749 105 + 14215200 ------UCCGUUUUAUAG-------CUGGC-AAACAUUAUGGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUGCCGAGCACUUGACAGCAUACGAAAAGUCAGAAAACUAUGGCCAAU ------.((((.......-------(((((-....(((((.(((((.....)))))..)))))....((((((((...)))))))).............)))))......))))..... ( -28.32, z-score = -2.52, R) >droYak2.chr2L 18182671 105 + 22324452 ------UCCGUUUUAUAG-------CUGGC-AAACAUUAUGGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUGCCGAGCACUUGACAGCAUACGAAAAGUCAGAAAACUAUGGCCAAU ------.((((.......-------(((((-....(((((.(((((.....)))))..)))))....((((((((...)))))))).............)))))......))))..... ( -28.32, z-score = -2.52, R) >droEre2.scaffold_4929 17836944 105 - 26641161 ------UCCGUUUUAUAG-------CUGGC-AAACAUUAUGGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUGCCGAGCACUUGACAGCAUACGAAAAGUCAGAAAACUAUGGCCAAU ------.((((.......-------(((((-....(((((.(((((.....)))))..)))))....((((((((...)))))))).............)))))......))))..... ( -28.32, z-score = -2.52, R) >droAna3.scaffold_13266 12837117 105 + 19884421 ------UCCAUUUUAUAG-------CUGGC-AAACAUUAUGGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUGCCGAGCACUUGACAGCAUACGAAAAGUCAGAAAACUAUGGCCAAU ------.((((.......-------(((((-....(((((.(((((.....)))))..)))))....((((((((...)))))))).............)))))......))))..... ( -28.72, z-score = -2.93, R) >dp4.chr3 14180149 105 + 19779522 ------UCCAUUUUAUAG-------CUGGC-AAACAUUAUGGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUGCCGAGCACUUGACAGCAUACGAAAAGUCAGAAAACUAUGGCCAAU ------.((((.......-------(((((-....(((((.(((((.....)))))..)))))....((((((((...)))))))).............)))))......))))..... ( -28.72, z-score = -2.93, R) >droPer1.super_4 6024247 105 - 7162766 ------UCCAUUUUAUAG-------CUGGC-AAACAUUAUGGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUGCCGAGCACUUGACAGCAUACGAAAAGUCAGAAAACUAUGGCCAAU ------.((((.......-------(((((-....(((((.(((((.....)))))..)))))....((((((((...)))))))).............)))))......))))..... ( -28.72, z-score = -2.93, R) >droWil1.scaffold_180701 3490286 108 + 3904529 ------UCCAUUUUAUAGAG-----CAGACCAAACAUUAUGGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUGUCGAGCACUUGACAGCAUACGAAAAGUCAGAAAACUAUGGCCAAU ------....(((..((..(-----(.........(((((.(((((.....)))))..)))))....(((((((.....)))))))..)).))..))).((((........)))).... ( -22.80, z-score = -1.73, R) >droVir3.scaffold_12875 5846320 115 + 20611582 UCCACUUCCAUUUUAUAGCAGC---CAGCCAAAACAUUAUAGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUG-CGAGCACUUGACAGCAUACAAAAAGUCAGAAAACUAUGGCCAAU ....................((---((((......(((((.(((((.....)))))..)))))....(((((((-....)))))))..))........(((......))).)))).... ( -23.80, z-score = -2.01, R) >droGri2.scaffold_15112 771740 109 + 5172618 ------UCCAUUUUAUAGCAGC---CAGCCAAAACAUUAUAGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUG-CGAGCACUUGACAGCAUACAAAAAGUCAGAAAACUAUGGCCAAU ------..............((---((((......(((((.(((((.....)))))..)))))....(((((((-....)))))))..))........(((......))).)))).... ( -23.80, z-score = -2.33, R) >droMoj3.scaffold_6496 2656111 118 - 26866924 UCCACUUCCAUUUUAUAGCAGCAGCCAGCCAAAACAUUAUAGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUG-CGAGCACUUGACAGCAUACAAAAAGUCAGCAAACUAUGGCCAAU .......................((((((......(((((.(((((.....)))))..)))))....(((((((-....)))))))..))........(((......))).)))).... ( -23.80, z-score = -1.25, R) >consensus ______UCCAUUUUAUAG_______CUGGC_AAACAUUAUGGCCAUGAUUAAUGGCAGAUAAUAAUUUCGAGUGCCGAGCACUUGACAGCAUACGAAAAGUCAGAAAACUAUGGCCAAU ...................................(((((.(((((.....)))))..)))))....(((((((.....))))))).............((((........)))).... (-19.28 = -19.28 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:44 2011