Locus 3465

Sequence ID dm3.chr2R
Location 5,549,588 – 5,549,689
Length 101
Max. P 0.981114
window4758

overview

Window 8

Location 5,549,588 – 5,549,689
Length 101
Sequences 5
Columns 121
Reading direction reverse
Mean pairwise identity 82.19
Shannon entropy 0.28894
G+C content 0.59150
Mean single sequence MFE -36.40
Consensus MFE -29.02
Energy contribution -29.66
Covariance contribution 0.64
Combinations/Pair 1.12
Mean z-score -2.37
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.07
SVM RNA-class probability 0.981114
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 5549588 101 - 21146708
-------------------GGUAA-GGGGGGAAUUGGUGGGGGGAGAGGGAGGAGCGGAUGGACGAGCGGUCCGCUUCUUUGUACGUGUCAAUUCGGGGGCCAAAGACUGGUUUUUGCACA
-------------------.((((-((...((((((..(.(.....(.((((((((((((.(.....).)))))))))))).).).)..))))))....((((.....))))))))))... ( -34.50, z-score =  -2.40, R)
>droEre2.scaffold_4929 17835621 119 + 26641161
GCUAAGAAGGGGCACUGGUGCGGGGAGGGGGGAACGGCAGGGG--GAGGGAGGAGCGGAUGGACGAGCGGUCCGCUUCUUUGUACGUGUCAAUUCGGGGGCCAAGGACUGGUUUUUGCACA
(((.......)))....((((...(((..(....)((((.(..--.(.((((((((((((.(.....).)))))))))))).).).))))..)))((((((((.....)))))))))))). ( -41.10, z-score =  -1.36, R)
>droYak2.chr2L 18181408 98 - 22324452
-------------------GGUAA-GAAGGGGAUUGGUGGGGG---AGGGAGGAGCGGAUGGACGAGCGGUCCGCUUCUUUGUACGUGUCAAUUCGGGGGCCAAAGACUGGUUUUUGCACA
-------------------.((((-((...((((((..(.(..---(.((((((((((((.(.....).)))))))))))).).).)..))))))....((((.....))))))))))... ( -36.10, z-score =  -3.09, R)
>droSec1.super_1 3166464 102 - 14215200
-------------------GGUAGUAGGGGGGAUUGGUGCGGGGAGAGGGGGGAGCGGAUGGACGAGCGGUCCGCUUCUUUGUACGUGUCAAUUCGGGGGCCAAGGACUGGUUUUUGCACA
-------------------.((.((((((.(((((((..((.....(.((((((((((((.(.....).)))))))))))).).))..)))))))....((((.....)))))))))))). ( -37.50, z-score =  -2.78, R)
>droSim1.chr2R 4191689 94 - 19596830
-------------------GGUAAUAGGGGGGAUUGG--------ACGGGAGGAGCGGAUGGACGAGCGGUCCGCUUCUUUGUACGUGUCAAUUCGGGGGCCAAAGACUGGUUUUUGCACA
-------------------.((((......(((((((--------(((.(((((((((((.(.....).)))))))))))....))).)))))))..((((((.....))))))))))... ( -32.80, z-score =  -2.21, R)
>consensus
___________________GGUAA_AGGGGGGAUUGGUGGGGG__GAGGGAGGAGCGGAUGGACGAGCGGUCCGCUUCUUUGUACGUGUCAAUUCGGGGGCCAAAGACUGGUUUUUGCACA
..............................(((((((((.(.....(.((((((((((((.(.....).)))))))))))).).).)))))))))((((((((.....))))))))..... (-29.02 = -29.66 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:43 2011