| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,514,453 – 5,514,609 |
| Length | 156 |
| Max. P | 0.792501 |
| Location | 5,514,453 – 5,514,609 |
|---|---|
| Length | 156 |
| Sequences | 4 |
| Columns | 156 |
| Reading direction | forward |
| Mean pairwise identity | 86.22 |
| Shannon entropy | 0.23258 |
| G+C content | 0.52100 |
| Mean single sequence MFE | -41.30 |
| Consensus MFE | -29.35 |
| Energy contribution | -29.60 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5514453 156 + 21146708 AACUGGCCACUGUCUGUUUGUGUUAACCCGACUCCCGAUCCUGCUCCACUGGAUCCCGAGUCCCGAGUCCUGCGUCCUGAGCCCUGAGUCCUGGAUCCUUCUGUGCGACUCCCUGGCAAAGUGUUAAUACACAAAUACCCAAAUGUGUAGUUAACA (((((..((.((..(((((((((((((.((((((..(((((.........)))))..)))))..................(((..((((((((((....)))).).)))))...)))...).))))..)))))))))..))..))..))))).... ( -41.80, z-score = -2.32, R) >droSec1.super_1 3131680 156 + 14215200 AACUGGCCACUGUCUGUUUGUGUUAACCCGACUCCCGAUCCUGCUCCACUGGAUCCCGAGUCCCGAGUCCUGAGUCCUGAGCCCUGAGUCCUGGAUCCUUCUGUGCGGCUCCCUGGCAAAGUGUUAAUACACAAAUACCCAAAUGUGUAGUUAACA (((((..((.((..(((((((((((((.((((((..(((((.........)))))..)))))..................(((..((((((((((....)))).).)))))...)))...).))))..)))))))))..))..))..))))).... ( -41.20, z-score = -1.56, R) >droYak2.chr2L 18146349 135 + 22324452 AACUGGCCACUGUCUGUUUGUGUUAAACUGACUCCCGAUCCUGCUCCACUGGAUCCCGAGUCCAGAGUCCUG---------------------GAUCCGUCUAUGCGGCGCCCUGGCAAAGUGUUAAUACACAAAUACCCAAAUGUGUAGUUAACA (((((..((.((..(((((((((..(((.(((((..(((((.........)))))..)))))....(((..(---------------------(..((((....))))..))..))).....)))...)))))))))..))..))..))))).... ( -37.40, z-score = -1.77, R) >droEre2.scaffold_4929 17797832 151 - 26641161 AACUGGCCACUGUCUGUUUGUGUUAACCCGACUCCCGAUCCUGCUCCACCGGAUCCCGAGUCCUGCGUCCAGAGCCCUGGAGCCUGGAGCCUGGAUCCUUC-----GACUCCCUCGCAAAGUGUUAAUACACAAAUACCCAAAUGUGUAGUUAACA (((((..((.((..(((((((((((((.(.......(((((.((((((..((((.....)))).((.(((((....))))))).))))))..)))))...(-----((.....)))....).))))..)))))))))..))..))..))))).... ( -44.80, z-score = -2.82, R) >consensus AACUGGCCACUGUCUGUUUGUGUUAACCCGACUCCCGAUCCUGCUCCACUGGAUCCCGAGUCCCGAGUCCUGAGUCCUGAGCCCUGAGUCCUGGAUCCUUCUGUGCGACUCCCUGGCAAAGUGUUAAUACACAAAUACCCAAAUGUGUAGUUAACA .(((.((((..(((...............(((((..(((((.........)))))..)))))..(..(((......................)))..)........)))....))))..)))(((((((((((..........))))).)))))). (-29.35 = -29.60 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:38 2011