| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,511,140 – 5,511,232 |
| Length | 92 |
| Max. P | 0.527027 |
| Location | 5,511,140 – 5,511,232 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 91.28 |
| Shannon entropy | 0.14721 |
| G+C content | 0.57733 |
| Mean single sequence MFE | -18.86 |
| Consensus MFE | -15.44 |
| Energy contribution | -15.84 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5511140 92 + 21146708 UUUCCCAUCCCUUUGCCAUUCGCUUUUCCGCGGCAUUUCCCUCGGAAGAGCCUGCAAACCCUGAAAACUCGACCCUUGACCCCCAGUCCCAA ...........(((((.....(((((((((.((......)).)))))))))..)))))...................(((.....))).... ( -19.50, z-score = -2.47, R) >droSim1.chr2R 4142961 92 + 19596830 UUUCCCCUCCCUUUGCCAUUCGCUUUUCCGCGGCAUUUCCCUGCGAAGAGCCUGCAAACCCUGAAAACUCGACCCUUGACCCCCAGUCCCAA ...........(((((.....(((((((.((((.......)))))))))))..)))))...................(((.....))).... ( -15.50, z-score = -1.62, R) >droSec1.super_1 3128395 92 + 14215200 UUUCCCCUCCCUUUGCCAUUCGCUUUUCCGCGGCAUUUCCCUGGGAAGAGCCGGCAAACCCUGAAAACUCGACCCUUGACCCCCAGUCCCAA ...........((((((....((((((((.(((.......))))))))))).))))))...................(((.....))).... ( -20.00, z-score = -0.84, R) >droYak2.chr2L 18142968 89 + 22324452 ---CCCCUCCGUUUGCCGUUCGCUUUUCCGCGGCAUUUCCCUCGGAAGAGCCUGCGAACCCUGAAUACUCGACCCUUGACCCCCAAUCCGAA ---.......((((((.(...(((((((((.((......)).)))))))))).)))))).........(((....(((.....)))..))). ( -22.10, z-score = -2.46, R) >droEre2.scaffold_4929 17794488 89 - 26641161 ---CCCCUUCGUUUGCCAUUCGCUUUUCCGCGGCAUUUCCCUCGGCAGAGCCUGCGAGCCCUGAAUACUCGACCCUUGACCCCCAAUCCCAA ---.......((((((.....(((((.(((.((......)).))).)))))..))))))................................. ( -17.20, z-score = -0.74, R) >consensus UUUCCCCUCCCUUUGCCAUUCGCUUUUCCGCGGCAUUUCCCUCGGAAGAGCCUGCAAACCCUGAAAACUCGACCCUUGACCCCCAGUCCCAA ...........(((((.....(((((((((.((......)).)))))))))..))))).................................. (-15.44 = -15.84 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:36 2011