| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,498,986 – 5,499,079 |
| Length | 93 |
| Max. P | 0.787787 |
| Location | 5,498,986 – 5,499,079 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 87.00 |
| Shannon entropy | 0.18220 |
| G+C content | 0.29757 |
| Mean single sequence MFE | -15.80 |
| Consensus MFE | -14.30 |
| Energy contribution | -14.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.787787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5498986 93 - 21146708 UAUAUACAUAUACAUAUACCGUACAUAUAGGAUAAGUGCACAAGACUAUAAGGUAACUCGUAGUCUACUUAAACGUAGAAACAAAUAUGUUCU .....((((((.....(((.((((.(((...))).))))...((((((..((....))..))))))........))).......))))))... ( -16.00, z-score = -0.74, R) >droSim1.chr2R 4154994 91 - 19596830 --UAUAAAGAUACAUAUUCCGUACAUAUAGGAUAAGUGCACAAGACUAUAAGGUAACUCGUAGUCUACUUAAACGUAGAAACAAAUAUGUUCU --.....(((.(((((((..((...(((.(..(((((.....((((((..((....))..)))))))))))..))))...)).)))))))))) ( -18.30, z-score = -2.01, R) >droYak2.chr2L 18131178 81 - 22324452 ------------UAUAUACCGUACAUAUAAGAUAAGUGCACAAGACUAUAAGGUAACUCUUAGUCUACUUAAACGUAAAAACAAAUAUGUUCU ------------........(.((((((....(((((.....((((((..((....))..)))))))))))...((....))..)))))).). ( -13.10, z-score = -1.42, R) >consensus __UAUA_A_AUACAUAUACCGUACAUAUAGGAUAAGUGCACAAGACUAUAAGGUAACUCGUAGUCUACUUAAACGUAGAAACAAAUAUGUUCU ....................((((.(((...))).))))...((((((..((....))..)))))).....((((((........)))))).. (-14.30 = -14.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:34 2011