| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,491,140 – 5,491,238 |
| Length | 98 |
| Max. P | 0.918512 |
| Location | 5,491,140 – 5,491,238 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 71.43 |
| Shannon entropy | 0.53955 |
| G+C content | 0.54198 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -12.55 |
| Energy contribution | -13.25 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.918512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5491140 98 - 21146708 UUACCGAUUCUG-AUCGGUUCGGGAA----CCCUCCCGGAUUCGAUAGCGGGCACACUGGUGCAGAAGAACGCGAAAAACACUACGGCAC-GGAGCAAACUCAC ...(((...(((-((((((((((((.----...))))))).))))).(((.((((....)))).......)))...........)))..)-))........... ( -28.30, z-score = -1.03, R) >droAna3.scaffold_13266 19757465 99 + 19884421 -UGCCAAUGCCGAAUCGAAUCGGAAAGCGCCUCGUCCAUAUGAAAUAUGGGGUACACUGGUUCGCGGUAACCCGAAAAACUCAACCG----AUGGCAAACUCAC -(((((.(((((...((((((((...(..((((((...........))))))..).)))))))))))))....((.....)).....----.)))))....... ( -27.50, z-score = -1.29, R) >droEre2.scaffold_4929 17775963 75 + 26641161 -UUCCGAUUCUG-AUAGGAUCGGGAA----UACU-CCGGAUUGGACAGCGAGCACACUGGUGCAGAAGCACCCCAAAAACAC---------------------- -(((((((((..-...))))))))).----....-.....((((...(....).....(((((....)))))))))......---------------------- ( -21.30, z-score = -1.86, R) >droYak2.chr2L 18123268 96 - 22324452 -UUCCGAUUCUG-AUCGGAUCGGGAA----CCCU-CCCGAUUCGAUAGCGGGCACACUGGUGCUGAAGUACUCGAAAAACACUGCGACAC-GGAGCAAACUCAC -(((((......-((((((((((((.----...)-))))))))))).((((((((....))))(((.....))).......))))....)-))))......... ( -34.60, z-score = -3.46, R) >droSec1.super_1 3106084 88 - 14215200 -UACCGAUUCUG-AUCGGAUCG--------------CGGAUUCGAUAGCGGGCACACUGGUGCAGAAGCACCCGAAAAACACUGCGACACGGGAGCAAACUCAC -..(((......-((((((((.--------------..)))))))).((((.......(((((....))))).........))))....)))(((....))).. ( -26.09, z-score = -1.85, R) >droSim1.chr2R 4125062 97 - 19596830 -UACCGAUUCUG-AUCGGAUCGGGAA----CCCUCCCGGGUUCGAUAGCGGGCACACUGGUGCAGAAGCACCCGAAAAACACUGCGACAC-GGAGCAAACUCAC -..(((((((..-...)))))))(((----(((....))))))....((((.......(((((....))))).........)))).....-.(((....))).. ( -33.69, z-score = -2.34, R) >consensus _UACCGAUUCUG_AUCGGAUCGGGAA____CCCU_CCGGAUUCGAUAGCGGGCACACUGGUGCAGAAGCACCCGAAAAACACUGCGACAC_GGAGCAAACUCAC ...(((((((......))))))).................((((...((..((((....))))....))...))))............................ (-12.55 = -13.25 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:33 2011