| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,464,187 – 5,464,294 |
| Length | 107 |
| Max. P | 0.767995 |
| Location | 5,464,187 – 5,464,294 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 85.04 |
| Shannon entropy | 0.23008 |
| G+C content | 0.29612 |
| Mean single sequence MFE | -21.94 |
| Consensus MFE | -15.18 |
| Energy contribution | -16.24 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5464187 107 + 21146708 GAUGUAAAGUAACAUUUUGGAGGGAUUAUUUCUAACUCCAGGCAACUGUUUUCAAAAGUAAAUCCAUUAAGUCAUUAUUUC-UUGCCCGCUUAAAAA----------CUUUACCCAAU ...(((((((.((.(((((((((((.....))).....(((....))).)))))))))).......((((((((.......-.))...))))))..)----------))))))..... ( -18.60, z-score = -0.98, R) >droSim1.chr2R 4097597 107 + 19596830 GAUGUAAAGUAACAUUUUGGAGGGAUUAUUUUUAAUUCCAGGCAACUGUUUUCAAAAGAAAAUUCAUGUAGUCAUUAUUUC-UUUCCCGCUUAAAAA----------CUUUACAUAAU .(((((((((........((((((((((....))))))).(((.((.((((((....))))))....)).)))........-..))).........)----------))))))))... ( -24.33, z-score = -3.25, R) >droSec1.super_1 3078908 107 + 14215200 GAUGUAAAGUAACAUUUUGGAGGGAUUAUUUUUAAUUCCAGGCAACUGUUUUCAAAAGUAAAUUCAUGUAGUCAUUAUUUC-UUUCCCGCUUAAAAA----------CUUUACAUAAU .(((((((((....((((((.((((((((((((.....(((....))).....))))))))....(((....)))......-..))))..)))))))----------))))))))... ( -23.10, z-score = -2.97, R) >droEre2.scaffold_4929 17748808 118 - 26641161 GAUCUAAAGUAACAUUUUGGAUGGGGUAUUUUUAAUUCAAGGCAACUGCUUUCAAAAAUAAAAUCAUUUUGCCAUUAUUUCCUUGCCCGCCAAAAAAUAAUAUCACUCUUUAGAUAAU .((((((((.....((((((...(((((.....(((....(((((.((.(((........))).))..)))))...)))....))))).))))))............))))))))... ( -21.73, z-score = -1.47, R) >consensus GAUGUAAAGUAACAUUUUGGAGGGAUUAUUUUUAAUUCCAGGCAACUGUUUUCAAAAGUAAAUUCAUGUAGUCAUUAUUUC_UUGCCCGCUUAAAAA__________CUUUACAUAAU .((((((((.....((((((((((((((....)))))))((....))...))))))).........((((((................)))))).............))))))))... (-15.18 = -16.24 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:32 2011