| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,459,260 – 5,459,350 |
| Length | 90 |
| Max. P | 0.921353 |
| Location | 5,459,260 – 5,459,350 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 68.51 |
| Shannon entropy | 0.58156 |
| G+C content | 0.60886 |
| Mean single sequence MFE | -39.46 |
| Consensus MFE | -14.95 |
| Energy contribution | -14.78 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.921353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5459260 90 + 21146708 UCCAGGAGUACUAUUAG---CUCCGCCCGCUGC---CAUCAUCAUAGCGGCCGCAUUUUGAGCGUCCACGUCCGCAGAGGAUGGCGGUGGAGGUAC------ .((.(((((.......)---))))..(((((((---((((.((...((((((((.......))).....).)))).)).))))))))))).))...------ ( -37.20, z-score = -2.47, R) >droSim1.chr2R 4091475 90 + 19596830 UCCAGGAGUACUAUUAG---CUCCGCCUGCUGC---CAUCAUCAUAGCGGCAGCAUUUUGGGCGUCCACGUCCGCAGAGGAUGGCGGUGGAGGUAC------ .((.(((((.......)---))))..(..((((---((((.((...((....)).....(((((....)))))...)).))))))))..).))...------ ( -37.90, z-score = -2.45, R) >droSec1.super_1 3073977 90 + 14215200 UCCAGGAGUACUAUUAG---CUCCGCCUGCUGC---CAUCAUCAUAGCGGCCGCAUUUUGGGCGUCCACGUCCGCAGAGGAUGGCGGUGGAGGUAC------ .((.(((((.......)---))))..(..((((---((((.((...((....)).....(((((....)))))...)).))))))))..).))...------ ( -37.70, z-score = -2.06, R) >droYak2.chr2L 18090799 90 + 22324452 UCCAGGAGUACUAUUAG---CUCCUCCUGCUGC---CAUCAUCAUGGCGGCCGCAUUUUGAGCGUCCACGUCCGCAGAAGAUGGCGGUGGAGGUGC------ ................(---(.(((((.(((((---((((.((...((((((((.......))).....).)))).)).)))))))))))))).))------ ( -36.70, z-score = -1.92, R) >dp4.chr3 15900535 96 + 19779522 UCCUGAUGCGUUGUUCGAGCCUCCUCCAGCAGCGUUCAUCAUCAUGGCUGCCGCCUGGGCGGCAUCCACCUCCGCUGGAGGCGGUGGAGGAGGUUG------ .((((((((((((((.(((....))).)))))))..))))....(((.((((((....)))))).)))(((((((((....))))))))))))...------ ( -47.80, z-score = -2.60, R) >droPer1.super_4 6301344 96 - 7162766 UCCUGAUGCGUUGUUCGAGCCUCCUCCAGCAGCGUUCAUCAUCAUGGCUGCCGCCUGGGCGGCAUCCACCUCCGCUGGAGGCGGUGGAGGAGGUUG------ .((((((((((((((.(((....))).)))))))..))))....(((.((((((....)))))).)))(((((((((....))))))))))))...------ ( -47.80, z-score = -2.60, R) >droGri2.scaffold_15245 2959416 81 - 18325388 ---------ACCGGGCGCA-UUCGCAUUGUUGU--UCAUCAUUAUGGC---------CUGUGGAUCCACCUCAGCGGAUGGUGGCGGCGGUGGUGCCUGUUG ---------..(((((((.-....(((((((((--.(((((((...((---------.((.((.....)).)))).)))))))))))))))))))))))... ( -31.10, z-score = -0.61, R) >consensus UCCAGGAGUACUAUUAG___CUCCGCCUGCUGC___CAUCAUCAUGGCGGCCGCAUUUUGGGCGUCCACGUCCGCAGAAGAUGGCGGUGGAGGUAC______ ....................(((((((.(((((.............)))))............(((..(.((....)).)..)))))))))).......... (-14.95 = -14.78 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:31 2011