| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,452,248 – 5,452,343 |
| Length | 95 |
| Max. P | 0.638203 |
| Location | 5,452,248 – 5,452,343 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 76.87 |
| Shannon entropy | 0.41124 |
| G+C content | 0.50014 |
| Mean single sequence MFE | -23.97 |
| Consensus MFE | -17.66 |
| Energy contribution | -18.88 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5452248 95 - 21146708 -------GCUUUGGCCAAAAACCCUAUGAUUAGGUGCAGUCCAGUCGAAACUGGGCCUUCUCUUGACCACACAAAUCGAGACUCGGUAA--ACUGAGGCUCCUC -------....(((.(((....((((....))))....(((((((....)))))))......))).)))........(((.(((((...--.))))).)))... ( -25.90, z-score = -1.07, R) >droSim1.chr2R 4084493 95 - 19596830 -------GCUUUGACCAAAAACCCUGUGAUUAGGUGCAGUCCAGUCGAAACUGGGCCUUCUCUUGACCGCACAAAUCGAGACUCGGUAA--ACUGAGGCUCCUC -------....................((((..((((.(((((((....)))))))..((....))..)))).))))(((.(((((...--.))))).)))... ( -26.60, z-score = -1.13, R) >droSec1.super_1 3067002 95 - 14215200 -------GCUUUGGCCAAAAACCCUGUGUUUAGGUGCAGUCCAGUCGAAACUGGGCCUUCUCUUGACCGCACAAAUUGAGACUCGGUAA--ACUGAGGCUCCUC -------((....)).........((((((((((.(..(((((((....)))))))...).)))))..)))))....(((.(((((...--.))))).)))... ( -26.40, z-score = -0.48, R) >droYak2.chr2L 18083959 93 - 22324452 -------GCUUUGACC-AAAACCCUGUGAUUAAGCCCAGUCCAGUCGAAUCUGGACUUU-UCUUGACCGCACAAAUCGAGACUCAGUGA--ACUGAGGGUCCUC -------.....((((-.......((((.(((((...(((((((......)))))))..-.))))).))))..........(((((...--.)))))))))... ( -32.00, z-score = -3.58, R) >droEre2.scaffold_4929 17736921 95 + 26641161 -------GCUUUGACC-AAAACCCUGUGUUUAGGCCCAUUCCAGUUGCAACUGGGCUCU-UCUUGACCGCACAAAUCGAGACUCAGUGAGCAUAGAGGCUCCUC -------.........-....(((((((((((((((((.............))))))..-((((((.........)))))).....))))))))).))...... ( -22.72, z-score = 0.28, R) >droAna3.scaffold_13266 19712835 97 + 19884421 GGCCAUAACCAAAAACCAAAACCCUAUGAUUAAGCCCAGUCCAGUCGAAACUAGACCA--ACUAGACC----AAGUUGAAACUGAAUCU-CUCUCUGUCCCUCC (((((((.................)))).....)))((((...(((.......)))((--(((.....----.)))))..)))).....-.............. ( -10.23, z-score = -0.05, R) >consensus _______GCUUUGACCAAAAACCCUGUGAUUAGGCCCAGUCCAGUCGAAACUGGGCCUU_UCUUGACCGCACAAAUCGAGACUCAGUAA__ACUGAGGCUCCUC ........................((((.(((((....((((((......)))))).....))))).))))......(((.((((((....)))))).)))... (-17.66 = -18.88 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:30 2011