| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,430,892 – 5,430,995 |
| Length | 103 |
| Max. P | 0.958262 |
| Location | 5,430,892 – 5,430,995 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.91 |
| Shannon entropy | 0.45744 |
| G+C content | 0.35474 |
| Mean single sequence MFE | -22.96 |
| Consensus MFE | -11.74 |
| Energy contribution | -12.94 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.958262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5430892 103 + 21146708 UUAUUCCAUUUCCCUAGCUUAGGUCUAUAAUUUUAAGCUAUCUUAGAGACUGAAAAACUA-----------------UUUCACAAUCUCUGUUUAACAGAGAACGAACCACAUAGAAGUG ......((((((..(((((((((........)))))))))((........(((((.....-----------------)))))...((((((.....))))))..))........)))))) ( -21.00, z-score = -2.43, R) >droEre2.scaffold_4929 17714570 112 - 26641161 ----UCCGUUUCUGUAGCUUCGCUCUAUAACUUGAUGAUAUCUUAGAGACUGGAAAACCAUAUUUUAGGCCAAUAAAUUUCCCAAUCUGUGUUUAACACAGAA----CCACAUAGAAGUG ----((((((((((.....(((.((........))))).....))))))).)))...((........))................((((((.....)))))).----.(((......))) ( -20.50, z-score = -1.02, R) >droYak2.chr2L_random 4055482 114 + 4064425 CUAUUC-AUUUCUGUGGCUUCGGUCUAUAAUUUUAAGCUAUCUCGCAGACUGGAAAACAAGGUUCUAGGCCGA-AAAUUUCCCAAUCGCUGCCUAACAAAGAG----CUACAUAGAAGUG .....(-(((((((((..((((((((..........((......))))))))))......(((((((((((((-...........)))..)))).....))))----)).)))))))))) ( -28.40, z-score = -1.77, R) >droSec1.super_1 3045587 87 + 14215200 CUAUUCCAUUU----AUCUUAGGGUUAUAAUUUUAAGCUAUCU--------GGAAAACUA-----------------UUUCCCAAUCUCUGUUUAACAGAGAA----CCACAUAGAAGUG ...(((((..(----(.((((((((....)))))))).))..)--------)))).....-----------------........((((((.....)))))).----.(((......))) ( -18.80, z-score = -2.37, R) >droSim1.chr2R 4062350 99 + 19596830 CUAUUCCAUUUCUUUAGCUUAGGUCUACAAUUUUAAGCUAUCUUAGAGACUGGAAAACUA-----------------UUUCCCAAUCUCUGUUUAACAGAGAA----CCACAUAGAAGUG ...((((((((((.(((((((((........)))))))))....))))).))))).....-----------------........((((((.....)))))).----.(((......))) ( -26.10, z-score = -3.77, R) >consensus CUAUUCCAUUUCUGUAGCUUAGGUCUAUAAUUUUAAGCUAUCUUAGAGACUGGAAAACUA_________________UUUCCCAAUCUCUGUUUAACAGAGAA____CCACAUAGAAGUG ......((((((..(((((((((........))))))))).............................................((((((.....))))))............)))))) (-11.74 = -12.94 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:25 2011