| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,416,141 – 2,416,243 |
| Length | 102 |
| Max. P | 0.658201 |
| Location | 2,416,141 – 2,416,243 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 59.91 |
| Shannon entropy | 0.68455 |
| G+C content | 0.50743 |
| Mean single sequence MFE | -32.17 |
| Consensus MFE | -13.76 |
| Energy contribution | -14.56 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2416141 102 + 23011544 -----------------AGCGGAUACA-CAGGCCUUGCGUUCAGCUUUAGGAUAGCAGGUUGAUAUAAAGCAGCUUCUCUUACUAGACAGCCCACUGCUACUUGUCACCGAACUCCCACU -----------------..(((....(-(((((((.((.....))...))).(((((((((.......))).(((..(((....))).)))...)))))))))))..))).......... ( -22.90, z-score = 0.44, R) >droSim1.chr2L 2374929 96 + 22036055 ------------------------ACGGCAGGCCUUGCGUUCAGGUUUAGAAUGGCAGGAUGACAUAAAGCAGCUUCUCUUACUAGAGAGGCCACUGCUACUUGUCACCGAACUCUCUCU ------------------------.(((.....(((((((((.......)))).))))).(((((...((((((((((((....))))))))...))))...)))))))).......... ( -31.70, z-score = -1.73, R) >droSec1.super_5 589493 96 + 5866729 ------------------------ACGGCAGGCCUUGCGUUCAGAUUUAGAAUAGCAGGAUGACAUAAAGCAGCUUCUCUUACUAGAGAGGCCACUGCUACUUGUCACCGAACUCUCUCU ------------------------.(((.....(((((((((.......)))).))))).(((((...((((((((((((....))))))))...))))...)))))))).......... ( -31.70, z-score = -2.42, R) >droYak2.chr2L 2402808 118 + 22324452 UUCGGACAUGCAGGCAUUCGCGUCGCCACGACGAUAGCAGGCUGGCCUUGAACUCAUGGAUGCCAUAAUGGAGCUCCUCAUAUCAGAGAGGCCACUUGUACUUUGCUCCGAACUCAUG-- ((((((...(((((......(((((...)))))...(((((.(((((((........(((..((.....))...)))..........))))))))))))..)))))))))))......-- ( -36.77, z-score = -0.86, R) >droEre2.scaffold_4929 2458104 118 + 26641161 CUCGGAAACACAGCUAUUCGCGUCGCUUUUAGGACAGUAGGAGGGCCCAGAGCUCUGGGGUGCCAUAAAGGAGCUUCUCGUACUAGAGAGGCCAUUGAUACUUGGCUCUGAACUAGCG-- ...(....)...(((((((..(((........)))((((.((((((((((....)))))((.((.....)).))))))).))))..((((.(((........)))))))))).)))).-- ( -37.80, z-score = -0.08, R) >consensus _____________________G__ACGGCAGGCCUUGCGUUCAGGUUUAGAAUAGCAGGAUGACAUAAAGCAGCUUCUCUUACUAGAGAGGCCACUGCUACUUGUCACCGAACUCUCGCU .........................................................(((.((((...(((((((((((......)))))))...))))...)))))))........... (-13.76 = -14.56 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:12 2011