| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,405,618 – 5,405,719 |
| Length | 101 |
| Max. P | 0.979288 |
| Location | 5,405,618 – 5,405,719 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 74.46 |
| Shannon entropy | 0.45068 |
| G+C content | 0.35511 |
| Mean single sequence MFE | -14.88 |
| Consensus MFE | -10.86 |
| Energy contribution | -9.86 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.979288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5405618 101 - 21146708 UAAAAAAAAAUCUUUAAUACCAGCCAAUUUGUGUUUAGAGCCCCUCCUCUAAGUGCCGAUAUAUCCUGAAUUUAUACGGUCAAAAUUCGAAAAAGAAAUCG--- ..........(((((...........(((.(..(((((((......)))))))..).)))......(((((((.........)))))))..))))).....--- ( -14.90, z-score = -2.10, R) >droEre2.scaffold_4929 17685617 84 + 26641161 -----------------UAAAAAAUCGUUUGUAUUUGGAGCUUCCCCUCUCAGUGGCGAUAUAUCCUGAAUCUAUUUGGCCAAACAUUGAAACCGAAACUG--- -----------------......(((((...((((.((((......)))).)))))))))..............(((((.............)))))....--- ( -9.72, z-score = 0.97, R) >droYak2.chr2L 18052535 98 - 22324452 ---UAAAAAAUAUUUUAUAUUUGCCAAUUUGUUUUGAGGCCUCCCCCUCUCAGAGCCGAUAUACCCUGAAUUUAUUUGGUAAAAAUUUGAAACCAAAACUG--- ---................((((((((........((((......))))((((.(........).))))......))))))))..((((....))))....--- ( -14.80, z-score = -1.52, R) >droSec1.super_1 3020424 103 - 14215200 -UAAAAAAAAUCUUUAAUACCAGCCAAUUUGUAUUUAGAGCCCCGCCUCUAAGUGCCGAUAUAUCCUUAAUUUAUACGGUCAAAAUUCGAAACCGAAACCGAAA -.........................(((.((((((((((......)))))))))).)))................((((.....((((....))))))))... ( -17.50, z-score = -2.81, R) >droSim1.chr2R 4049459 100 - 19596830 -UAAAAAAAAUCCUUAAUACCAGCCAAUUUGUAUUUAGAGCCCCUCCUCUAAGUGCCGAUAUAUCCUGAAUUUAUACGGUCAAAAUUCGAAACCGAAACCG--- -...................(((...(((.((((((((((......)))))))))).))).....)))........((((.....((((....))))))))--- ( -17.50, z-score = -3.61, R) >consensus __AAAAAAAAUCUUUAAUACCAGCCAAUUUGUAUUUAGAGCCCCCCCUCUAAGUGCCGAUAUAUCCUGAAUUUAUACGGUCAAAAUUCGAAACCGAAACCG___ ..........................(((.((((((((((......)))))))))).)))................((((.....((((....))))))))... (-10.86 = -9.86 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:24 2011