| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,388,514 – 5,388,568 |
| Length | 54 |
| Max. P | 0.784470 |
| Location | 5,388,514 – 5,388,568 |
|---|---|
| Length | 54 |
| Sequences | 7 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 80.74 |
| Shannon entropy | 0.39426 |
| G+C content | 0.43590 |
| Mean single sequence MFE | -13.57 |
| Consensus MFE | -7.74 |
| Energy contribution | -8.41 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784470 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 5388514 54 + 21146708 AUAAAUUUGUCCCUGUGCGGCAGACAACUGCAGCGCAUUAAUCUCGGACAGACU .....(((((((.(((((.((((....)))).)))))........))))))).. ( -18.20, z-score = -3.05, R) >droWil1.scaffold_180701 3181026 51 - 3904529 ---ACAGUUUUGUCGUCUUGUACACAACUGCAACUCAUUAAUCUUGGCUUGAAU ---.(((((.(((........))).)))))(((..((.......))..)))... ( -6.70, z-score = -0.08, R) >droSim1.chr2R 4031281 54 + 19596830 AUAAAUUUGUCCCUGUGCCGCAGACAACUGCAGCGCAUUAAUCUCGGACAGACU .....(((((((.(((((.((((....)))).)))))........))))))).. ( -18.20, z-score = -3.63, R) >droSec1.super_1 3002991 54 + 14215200 AUAAAUUUGUCCCUGUGCCGCAGACAACUGCAGCGCAUUAAUCUCGGAAAGACU ........((((((((((.((((....)))).)))))........))...))). ( -12.80, z-score = -1.56, R) >droYak2.chr2L 18034910 54 + 22324452 AAAAAUUUGUCCCUGUGCGGCAGACAACUGCAGCGCAUUAAUCUUGGACAGACU .....(((((((.(((((.((((....)))).)))))........))))))).. ( -18.20, z-score = -3.04, R) >droEre2.scaffold_4929 17668217 54 - 26641161 AUAAAUUUGUCCCUGUGCGGCAGACAACUGCAGCGCAUUAAUCUUGGACAGACU .....(((((((.(((((.((((....)))).)))))........))))))).. ( -18.20, z-score = -3.05, R) >droAna3.scaffold_13266 19644602 52 - 19884421 --UAAUUUUUAUUUGUGCAUCAAACAACUGCAUCGCAUUAAUCUUGGCUAGACU --............(((((.........)))))..................... ( -2.70, z-score = 1.45, R) >consensus AUAAAUUUGUCCCUGUGCGGCAGACAACUGCAGCGCAUUAAUCUUGGACAGACU .............(((((.((((....)))).)))))................. ( -7.74 = -8.41 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:23 2011