| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,332,609 – 5,332,707 |
| Length | 98 |
| Max. P | 0.790090 |
| Location | 5,332,609 – 5,332,707 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 70.42 |
| Shannon entropy | 0.46807 |
| G+C content | 0.40180 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -11.14 |
| Energy contribution | -11.07 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.790090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5332609 98 + 21146708 UCCAAGGAAAGUUCGGCGAAAGUCGUUG---CCUAUCAAUGAUGGGCGGUCUCAAGGGCU------GUACAUACAUACAAACAUACAUAUAUUUUGAUAGCUUACAA .((..........((((....))))..(---((((((...)))))))))......(((((------((.((.......................))))))))).... ( -22.80, z-score = -1.26, R) >droYak2.chr2L 17981803 102 + 22324452 UCCAAGGAAAGUUCGGCGAAAGUCGGUG---CCUAUCAGAGAUAGGCA--GUCAAGGGCUUCUGCAGUAUAUAUGUACAUAUAUUUCGAUAGCAGAACAGCUUACAA .((.........(((((....)))))((---((((((...))))))))--.....))((((((((.(.((((((....))))))..)....)))))..)))...... ( -30.50, z-score = -3.09, R) >droEre2.scaffold_4929 17622611 92 - 26641161 UCCAAGGAAAGUUCGGCGAAAGUCGCUG---CCUAUCAAAGAUAGGCA--CUCAAGGGCU----------GUGCGUAUAUAUAUUUUGAUAGCAGAACAACUUACAA ......(.(((((((((....))))(((---(.(((((((((((.(((--(.........----------)))).))).....))))))))))))...))))).).. ( -26.70, z-score = -2.59, R) >droAna3.scaffold_13266 19594069 96 - 19884421 UUCAAGGAAAGUUUGGCGAAAGUUUUUGGGGCUUAUCAAGGAAACGGAAUGACAAGGGCU-------UACAUAUUUACA-AUAAAUAGAUAAU---ACGGCUUAAAA .(((.((.(((((((((....)))....)))))).))..(....)....)))...(((((-------....((((((..-.....))))))..---..))))).... ( -13.30, z-score = -0.46, R) >consensus UCCAAGGAAAGUUCGGCGAAAGUCGUUG___CCUAUCAAAGAUAGGCA__CUCAAGGGCU_______UACAUACGUACAUAUAUAUAGAUAGCAGAACAGCUUACAA .........((((((((....))).......((((((...)))))).........)))))............................................... (-11.14 = -11.07 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:20 2011