| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,324,782 – 5,324,879 |
| Length | 97 |
| Max. P | 0.700775 |
| Location | 5,324,782 – 5,324,879 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.26 |
| Shannon entropy | 0.48397 |
| G+C content | 0.42337 |
| Mean single sequence MFE | -25.80 |
| Consensus MFE | -11.74 |
| Energy contribution | -13.14 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5324782 97 - 21146708 ---GUACAUGGCGAGAAACAUGGCCGUCGUUUUCGCUUCUUUGUGGUGCC--GAGAAACCGUCCACAACUCAUGCACCCUAAGGGAGU------------AAAAUGAAAACAAA------ ---....(((((.(......).))))).(((((((((((((((.(((((.--(((.............)))..))))).)))))))))------------.....))))))...------ ( -29.42, z-score = -2.14, R) >droSim1.chr2R_random 1707481 87 - 2996586 ---GUACAUGGCGAGAAACAUGGUCGCCGAUUUCGCUUCUUUGUGGUGCU--GAGA----------AACUCAUACACCCAAAGGGCGU------------AAAAUGAAAACAAA------ ---...((((((((.........)))))..(((((((.(((((.((((.(--(((.----------..))))..))))))))))))).------------))))))........------ ( -25.00, z-score = -2.13, R) >droSec1.super_1 2949832 87 - 14215200 ---GUACAUGGCGAGAAACAUGGUCGUCGUUUUCGCUUCUUUGUGGUGCU--GAGA----------AACUCAUACACCCAAAGGGCGU------------AAAAUGAAAACAAA------ ---...((((........))))((..(((((((((((.(((((.((((.(--(((.----------..))))..))))))))))))).------------)))))))..))...------ ( -29.50, z-score = -3.61, R) >droYak2.chr2L 17973759 118 - 22324452 UAGGUACAUGGCGAGAAACAUCACCGUCGAUUUCGCUUCUGUGUAGUGUC--UAGAAAACUUCCCUUACUCGGACACCAUAUUAGAGUUAUUUAUACCUUGAAGUAAAAAAAAAAAAGUA .(((((.((((.((......)).)))).......((((..((((.(((((--(.((.............)))))))).))))..))))......)))))..................... ( -20.62, z-score = 0.05, R) >droEre2.scaffold_4929 17614561 117 + 26641161 ---GUACAUGGCGAGAAACAUCACCGUCGAUUUCGCUUCAUUGUGGUGUCUUUAGAAACCUUCCAUAACUCGGACACCAAGAAAGAGUUAUUUAUACCUCAAAGUGAAAAAGAAAACGAA ---.....(((.((......)).)))(((.((((..((((((.((((((((....................)))))))).....(((.((....)).)))..))))))...)))).))). ( -24.45, z-score = -0.89, R) >consensus ___GUACAUGGCGAGAAACAUGGCCGUCGAUUUCGCUUCUUUGUGGUGCC__GAGAAA_C_UCC__AACUCAUACACCCAAAGGGAGU____________AAAAUGAAAACAAA______ ........(((((...........))))).....((((((((..(((((...(((.............)))..)))))..))))))))................................ (-11.74 = -13.14 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:19 2011