| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,300,094 – 5,300,186 |
| Length | 92 |
| Max. P | 0.622284 |
| Location | 5,300,094 – 5,300,186 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 74.15 |
| Shannon entropy | 0.43103 |
| G+C content | 0.42170 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -12.72 |
| Energy contribution | -12.52 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622284 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5300094 92 - 21146708 UAUCCCAGAAUUCUGGCAUCUGGCCAAGUGGCCUGCUCUUACAAAAUCUUUC--CGAGGCACA-----AUACACUUUGCCCAAAUUCAAUAAUUUACAU .......(((((..((((...((((....))))(((.(((............--.))))))..-----........))))..)))))............ ( -19.52, z-score = -1.82, R) >droEre2.scaffold_4929 9275781 97 + 26641161 CAUCCCAGAAUUCUGGCAUCUGGCCAAGUGGCUAGCUCUUACAGAACGUUUU--CGGGGCGCUCGGUUUUACACUUUUGUCGAAUCAAAUACUUUACAU ..(((((((((((((....((((((....))))))......))))..)))))--.)))).....(((((.(((....))).)))))............. ( -23.70, z-score = -1.33, R) >droYak2.chr2L 17947431 99 - 22324452 CAUCCCAGCAUUCUGGCAUCUGGCCAAGUGGCUAGCUCCCACAAAAUAUUUUUCCGGGGCGCUCGGUCUUACACUUUUGCCGAAUUAAAUACUUUACGU ....((((....))))....((((.(((((((((((.(((...(((....)))...))).))).)))....)))))..))))................. ( -21.40, z-score = 0.02, R) >droSec1.super_1 2922067 73 - 14215200 CAUUCCAGAAUUCUGGCAUCUGGCCAAGUGGCCAGCUCUUACAAAAUCUUUU--CGAG------------------------AAUUAAAUACUUUACGU ....((((....))))...((((((....))))))(((..............--.)))------------------------................. ( -15.66, z-score = -1.69, R) >droSim1.chr2R 3946890 73 - 19596830 CAUCCCAGAAUUCUGGCAUCUGGCCAAGUGGUUAGCUCUUACAAAAUCUUUU--CGAG------------------------AAUUAAAUACUUUACAU ....((((....))))...((((((....))))))(((..............--.)))------------------------................. ( -11.06, z-score = -0.23, R) >consensus CAUCCCAGAAUUCUGGCAUCUGGCCAAGUGGCUAGCUCUUACAAAAUCUUUU__CGAGGC_C_______UACACUUU___C_AAUUAAAUACUUUACAU ....((((....))))...((((((....))))))................................................................ (-12.72 = -12.52 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:19 2011