| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,271,486 – 5,271,577 |
| Length | 91 |
| Max. P | 0.926314 |
| Location | 5,271,486 – 5,271,577 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 73.80 |
| Shannon entropy | 0.46545 |
| G+C content | 0.49382 |
| Mean single sequence MFE | -31.17 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.63 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.926314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5271486 91 + 21146708 -------------UCUGGCAGUUGACUUGCUCGCUUUUGCUGAGGUUUCAGCUGCCGGACUUAAGACAAACCUGCUGAAAGUGGGUCAGGCCAGAAUAGUUCAU- -------------((((((((((((....(((((....)).)))...)))))))))))).......(..(((..(.....)..)))..)...............- ( -30.10, z-score = -0.92, R) >droPer1.super_4 4650576 104 + 7162766 CCUGACGGGAAGGACAGCCUGGUCGGACACCUAUUUCCACUAUCGCUCCUGCGGUUGGUUCUGGUUCCACUUCGCACUUUGGCGGUCGCGUCAGAG-AAUUCUUG ......(.(((((((......)))(((.(((.....(((..(((((....))))))))....)))))).)))).).((((((((....))))))))-........ ( -34.00, z-score = -0.63, R) >droSim1.chr2R 3918394 91 + 19596830 -------------UCUGGCAGUUGACUUACUCGCUUUUGCUGAGGUUUCAGCUGCCGGACUUAAGACAAACCUGCUGAAAGUGGGUCAGGCCAGAAUAGUUCAU- -------------((((((((((((....(((((....)).)))...)))))))))))).......(..(((..(.....)..)))..)...............- ( -31.20, z-score = -1.72, R) >droSec1.super_1 2893709 91 + 14215200 -------------UCUGGCAGUUGACUUACUCGCUUUUGCUGAGGAUUCAGCUGCCGGACUUAAGACAAACCUGCUGAAAGUGGGUCAGGCCAGAAUAGUUCAU- -------------((((((((((((....(((((....)).)))...)))))))))))).......(..(((..(.....)..)))..)...............- ( -31.20, z-score = -1.88, R) >droYak2.chr2L 17918284 91 + 22324452 -------------UCAGGCAGUUGACUUACUCGCUCUUUCUGAGGUUUCAGCUGCUGGACUUUGGACAAACCUGCUGAAAGUGGGUCAAGCCAGAAUAGUUUAU- -------------((.(((((((((....((((.......))))...))))))))).)).(((((....(((..(.....)..)))....))))).........- ( -28.30, z-score = -1.05, R) >droEre2.scaffold_4929 9246764 91 - 26641161 -------------UCUGGCAGUUGACUUACUCGCUUUUGCUGAGGUUUCAGCUGCCGGACUUAAGACAAACCAGCUGAAAGUGGGUCAAGCCAGAAUAGUUCAU- -------------((((((..((((((((((.(((((....)))))((((((((...(........)....)))))))))))))))))))))))).........- ( -32.20, z-score = -2.36, R) >consensus _____________UCUGGCAGUUGACUUACUCGCUUUUGCUGAGGUUUCAGCUGCCGGACUUAAGACAAACCUGCUGAAAGUGGGUCAGGCCAGAAUAGUUCAU_ .............((((((((((((....(((((....)).)))...))))))))))))..........(((((((...)))))))................... (-21.40 = -21.63 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:13 2011