| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,263,519 – 5,263,632 |
| Length | 113 |
| Max. P | 0.843793 |
| Location | 5,263,519 – 5,263,632 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 65.35 |
| Shannon entropy | 0.55961 |
| G+C content | 0.35593 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -9.62 |
| Energy contribution | -11.25 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.843793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5263519 113 + 21146708 CAUAAAUCGCUCUUCU--CUGUGAUUCUCACUGUUAUAAUUUAGGAACGCGCUUCAUGGUUCUCGAUUCUCAUUUUCAAAGGCAGCUGUUUCUGUUCUUAUUUUAAUUUAAUUAA ....((((((......--..)))))).....((..((((..(((((((((((((..(((................))).)))).)).)))))))...))))..)).......... ( -15.29, z-score = -0.19, R) >droSec1.super_1 2885749 112 + 14215200 CAUAAAUCGCCCCUCU--CUGCGAUUCUCACUGUUAUAAGUGAGGAACGCGCUUCUUGGUUCUUGAUUCUCAUUUUCAA-GGCAGCUGUUGCUGUUGUUGUUUUAAUUUAAUAAA ........(((.....--.((((.((((((((......)))))))).))))......))).(((((.........))))-)(((((....)))))(((((........))))).. ( -28.50, z-score = -2.64, R) >droSim1.chr2R 3910394 112 + 19596830 -AUAAAUCGCCCCUCU--CUGCGAUUCUCACUGUUAUAAGUGAGAAACGCGCUUCUUGGUUCAUGAUUCUCAUUUUCAAAGGCAGCUGUUGCUGUUGUUGUUUUAAUUUAAUAAA -...(((((((.....--.((((.((((((((......)))))))).))))......)))....))))........(((..(((((....)))))..)))............... ( -28.60, z-score = -3.13, R) >droWil1.scaffold_180697 3408779 97 - 4168966 CAAUUAUCGACUUAUCGACUAAGAGUUACCCUAUAAUAAU--AGGAAAGAUUCAUAUACCUAUCGAACAGGAUACUAUUACUCAAC-----CUGAUGUUGAAUA----------- ..............(((((...(((((..(((((....))--)))...)))))..............((((..............)-----)))..)))))...----------- ( -15.14, z-score = -0.76, R) >consensus CAUAAAUCGCCCCUCU__CUGCGAUUCUCACUGUUAUAAGUGAGGAACGCGCUUCAUGGUUCUCGAUUCUCAUUUUCAAAGGCAGCUGUUGCUGUUGUUGUUUUAAUUUAAUAAA ....(((((...........(((.((((((((......))))))))...)))...........)))))............((((((....))))))................... ( -9.62 = -11.25 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:12 2011