| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,257,321 – 5,257,422 |
| Length | 101 |
| Max. P | 0.961182 |
| Location | 5,257,321 – 5,257,422 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.10 |
| Shannon entropy | 0.45942 |
| G+C content | 0.29005 |
| Mean single sequence MFE | -19.22 |
| Consensus MFE | -10.57 |
| Energy contribution | -10.69 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.961182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5257321 101 - 21146708 CACAUUUCUAAUUCGUUG-CGUAUUGUGUUUUAUUUCGUUAUAUUUC-AAAUUUAGAAUACCUAACGAAAUGUAAGUACAAGCGCAAAAUCAAAAGACUAAAG-------- ......(((......(((-(((.((((((((((((((((((...(((-.......)))....)))))))))).)))))))))))))).......)))......-------- ( -21.72, z-score = -3.22, R) >droGri2.scaffold_15245 8634409 101 + 18325388 -ACAUAUCUAAUUCCGUG-UCUAUUGAAUUUUGUUUCGUUAUAUUUC-AAUUAUAGAAUACCUAACGAAAUGUAAGUACAAGCAUAAUCCAAAAGAAUUAAUAG------- -.................-.(((((((.(((((.(((((((...(((-.......)))....)))))))((((........))))....)))))...)))))))------- ( -13.10, z-score = -1.01, R) >droVir3.scaffold_12875 1295891 96 - 20611582 -ACACAUCUAGUGCCUUG-UGCAUUGUAUUUUGUUUCGUUAUAUUUC-AAAUUUAGAAAACCUCGCGAAAUGUAAGUACAAGUAUAAACAAAAAAUGAC------------ -...(((....((..(((-(((.((((((((((((((((....((((-.......)))).....)))))))).)))))))))))))).))....)))..------------ ( -19.50, z-score = -2.22, R) >droMoj3.scaffold_6496 4381594 97 - 26866924 -ACAUAUCUAAUGCCGUG-UGUAUUGUAUUUUGUUUCGUUAUAUUUC-ACUUUUAGAAUCCCUAACGAAAUGUAAGUACAA-CACAUCAAGACAG-AUUCAU--------- -....((((......(((-(((..(((((((((((((((((...(((-.......)))....)))))))))).))))))))-)))))......))-))....--------- ( -21.10, z-score = -2.97, R) >droWil1.scaffold_180697 3399426 96 + 4168966 --UCUAUCUAAUGCCCUGAUGUAUUGUAUUUUGUUUCGUUAUAUUUC-AAAUUUAGAAUACCUAACGAAAUGUAAGUACAUACAAAGCACAAAAAACAA------------ --.........(((.....(((((.((((((((((((((((...(((-.......)))....)))))))))).)))))))))))..)))..........------------ ( -17.90, z-score = -2.94, R) >droPer1.super_4 4636652 109 - 7162766 CACAUAUCUAAUGCCGUG-UGUAUUGUAUUUUGUUUCGUUAUAUUUC-AAAUAUAGAAUACAAAACGAAAUGUAAGUACAAGCACAAACAACAAAUCUACCAAAAACCACA ...........((...((-(((.(((((((((((((((((....(((-.......))).....))))))))).)))))))))))))..))..................... ( -19.50, z-score = -2.34, R) >dp4.chr3 9313267 109 - 19779522 CACAUAUCUAAUGCCGUG-UGUAUUGUAUUUUGUUUCGUUAUAUUUC-AAAUAUAGAAUACAAAACGAAAUGUAAGUACAAGCACAAACAACAAAUCUACCAAAAACCACA ...........((...((-(((.(((((((((((((((((....(((-.......))).....))))))))).)))))))))))))..))..................... ( -19.50, z-score = -2.34, R) >droAna3.scaffold_13266 11563925 99 + 19884421 CACAUAUCUAAUGCCAUG-UGUAUUGUGUUUUGUUUCGUUAUAUUUC-AACUUUAGAAGACCUAAAGAAAUGUAAGUACAA--GCACAAAAACAAUGUUUAAA-------- .((((((........)))-))).((((((((.((..(.(((((((((-...(((((.....))))))))))))))).))))--))))))..............-------- ( -18.80, z-score = -1.51, R) >droEre2.scaffold_4929 9232778 100 + 26641161 CACAUUUCUAAUGCGUUG-CGUAUUGUGUUUUGUUUCAUUGUAUUUCAAUAUUUAGAAUACCUAACGAAAUGUAAGUACAAGCACAAAAACAAAAGACAAU---------- ..........((((...)-)))(((((.((((((((..((((((((((....((((.....)))).....)).))))))))......)))))))).)))))---------- ( -17.60, z-score = -0.89, R) >droYak2.chr2L 17903960 100 - 22324452 CACAUUUCUAAUACGUUG-CGUAUUGUGUUUUGUUUCGUUAUAUUUCAAAAUUUAGAAUACCUAACGAAAUGUAAGUACAAGCACAAAAACAAAAGACAAA---------- .........((((((...-))))))((.((((((((..(((((((((.....((((.....)))).)))))))))((....))....)))))))).))...---------- ( -16.20, z-score = -0.82, R) >droSec1.super_1 2879543 101 - 14215200 CACAUUUCUAAUGCGUUG-CGUAUUGUGUUUUGUUUCGUUAUAUUUC-AAAUUUAGAAAACGUAACGAAAUGUAAGUACAAUCGCAAAAUGAAAAGACUAAAG-------- ....((((.......(((-((.((((((((((((((((((((.((((-.......))))..))))))))))).))))))))))))))...)))).........-------- ( -23.40, z-score = -2.34, R) >droSim1.chr2R 3904262 101 - 19596830 CACAUUUCUAAUGCGUUG-CGUAUUGUGUUUUGUUUCGUUAUAUUUC-AAAUUUAGAAAACCUAACGAAAUGUAAGUACAAGCGCAAAAUCAAAAGACCAAAG-------- ......(((..((..(((-(((.((((((((((((((((((..((((-.......))))...)))))))))).))))))))))))))...))..)))......-------- ( -22.30, z-score = -2.84, R) >consensus CACAUAUCUAAUGCCUUG_UGUAUUGUAUUUUGUUUCGUUAUAUUUC_AAAUUUAGAAUACCUAACGAAAUGUAAGUACAAGCACAAAAAAAAAAGACAAAA_________ .......................((((((((((((((((((...(((........)))....)))))))))).)))))))).............................. (-10.57 = -10.69 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:11 2011