| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,227,063 – 5,227,127 |
| Length | 64 |
| Max. P | 0.753803 |
| Location | 5,227,063 – 5,227,127 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 77.19 |
| Shannon entropy | 0.44585 |
| G+C content | 0.43885 |
| Mean single sequence MFE | -15.75 |
| Consensus MFE | -9.05 |
| Energy contribution | -10.00 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753803 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5227063 64 + 21146708 UUUAAUUAAGCUGAUAGUCUGCUAUUUGCAGGCGCCCUGCAAUCCGGCACUGGAAAAAACUCGG .........((.....((((((.....)))))).....))..((((....)))).......... ( -15.80, z-score = -0.74, R) >droSim1.chr2R_random 1705090 64 + 2996586 UUUAAUUAAGCUGAUAGUCUGCUCUUUGCAGGCGCCCUGCAAUCCGGCACUGGAAAAAACACUG .........((.....((((((.....)))))).....))..((((....)))).......... ( -15.80, z-score = -1.09, R) >droSec1.super_1 2858913 64 + 14215200 UUUAAUUAAGCUGAUAGUCUGCUCUUUGCAGGCGCCCUGCAAUCCGACACUGGAAAAAAAACUG .........((.....((((((.....)))))).....))..((((....)))).......... ( -15.20, z-score = -1.89, R) >droAna3.scaffold_13266 11542219 54 - 19884421 ---AACCAAGUUCUUGGCCAACUAUAUAGAUG-GCUAAGU------GCACUAAGAAAAAUACUA ---......((.((((((((.((....)).))-)))))).------))................ ( -14.10, z-score = -2.92, R) >droYak2.chr2L 17882617 64 + 22324452 UUUAAUUAAGCUGAUAGUCUGCUCUUUGCAGGCGCACUGCAAUCCGGCACUGCAAAAAUCUAUG ............(((.((((((.....))))))(((.(((......))).)))....))).... ( -17.80, z-score = -2.00, R) >droEre2.scaffold_4929 9211453 64 - 26641161 UUUAAUUAAGCUGAUAGUCUGCUCUGUGCAGGCGCACUGCAAUCCGGCACUGGAAAAAACUGUG .........((.....((((((.....)))))).....))..((((....)))).......... ( -15.80, z-score = -0.62, R) >consensus UUUAAUUAAGCUGAUAGUCUGCUCUUUGCAGGCGCCCUGCAAUCCGGCACUGGAAAAAACACUG .........((((...((((((.....))))))((...))....))))................ ( -9.05 = -10.00 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:06 2011