| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,216,740 – 5,216,860 |
| Length | 120 |
| Max. P | 0.994852 |
| Location | 5,216,740 – 5,216,860 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 66.67 |
| Shannon entropy | 0.61888 |
| G+C content | 0.48314 |
| Mean single sequence MFE | -37.18 |
| Consensus MFE | -16.51 |
| Energy contribution | -16.38 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.56 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.74 |
| SVM RNA-class probability | 0.994852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5216740 120 - 21146708 GGUCGGAUUUGGACCAAAACGAGGAGCCAUGAAAGGGGCCAAGUUGAUGAGUGCACAUCUCGAUUUGGCAUCUUCCCUGGCCCAUUUGAGUAUCCCAUUGAGCACGUUUAAAGCCGAUCA ((((((.(((((((........((.((((.(.(((..((((((((((.((.......))))))))))))..))).).))))))......((.((.....))..))))))))).)))))). ( -42.10, z-score = -2.17, R) >droAna3.scaffold_13266 11531955 90 + 19884421 -------------------------GGGGUCUUUUGAUUCAUUUCAAUGGCU-CUGAACGGGGUAUGAUGAGUUUCAUUCUUCCU----AUAUGGCAAUUAAGAUGUUGGGAGGCUCUGG -------------------------(((((((((..(..(((((.(((.(((-.((...((((.((((......)))).))))..----.)).))).))).))))))..))))))))).. ( -24.10, z-score = -0.98, R) >droEre2.scaffold_4929 9201101 119 + 26641161 GAACGGAUUUGGC-CGAAACGAGCAGCCAUGAAAGGGGUCAAGUUGAUGAGUGCACAUCUCGAUUUGGCAACUUCCAUGGCCCAUUUGAGUAUCCCAUUGAGCACGUUUAAAGCCGAUCA .....((((.(((-..(((((.((.((((((.(((..((((((((((.((.......))))))))))))..))).))))))....(..(........)..))).)))))...))))))). ( -41.00, z-score = -2.71, R) >droYak2.chr2L 17872433 119 - 22324452 GAACGGAUUUGGA-CGAAACGAGGAGCCAUGAAAGGGGCCAAGUUGAUGAGUGCACAUCUCGAUUUGGCAUCUUCCAUGGCCCAUUUGAGUAUCCCAUUGAGCACGUUUAAAGCCGAUCA ((.(((.((((((-((......((.((((((.(((..((((((((((.((.......))))))))))))..))).))))))))...((..((......))..)))))))))).))).)). ( -45.20, z-score = -3.82, R) >droSec1.super_1 2848773 90 - 14215200 ------------------------------GAUCGGGGCCAAGUUGAUGAGUGCACAUCUCGAUUUGGCAUCUUCCUUGGCCCAUUUGAGUAUCCCAUUGAGCACGUUUGAAGCCGAUCA ------------------------------((((((.((((((((((.((.......))))))))))))..((((..((((.((..((.......)).)).)).))...)))))))))). ( -29.30, z-score = -1.57, R) >droSim1.chr2R 3872435 108 - 19596830 ------------GAUCGGAUUUGGAGCCAUGAAAGGGGCCAAGUUGAUGAGUGCACAUCUCGAUUUGGCAUCUUCCUUGGCCCAUUUGAGUAUCCCAUUGAGCACGCUUAAAGCCGAUCA ------------((((((...(((.((((.(.(((..((((((((((.((.......))))))))))))..))).).)))))))(((((((.((.....))....))))))).)))))). ( -41.40, z-score = -3.17, R) >consensus ______________C_AAACGAGGAGCCAUGAAAGGGGCCAAGUUGAUGAGUGCACAUCUCGAUUUGGCAUCUUCCAUGGCCCAUUUGAGUAUCCCAUUGAGCACGUUUAAAGCCGAUCA .........................((((.(.(((..((((((((((.((.......))))))))))))..))).).))))................(((((....)))))......... (-16.51 = -16.38 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:06 2011