| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,216,054 – 5,216,146 |
| Length | 92 |
| Max. P | 0.999685 |
| Location | 5,216,054 – 5,216,146 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 63.45 |
| Shannon entropy | 0.60611 |
| G+C content | 0.37766 |
| Mean single sequence MFE | -22.45 |
| Consensus MFE | -12.68 |
| Energy contribution | -13.33 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.95 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 4.19 |
| SVM RNA-class probability | 0.999685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5216054 92 - 21146708 AGCGGUGAAGUUAUUUCCUAUUCAUAAUUUCACUGCGACUCCAAGUCUACCAUCAGUUUAUCCGCUUCUAAGUGCACUGAAAAAAUAUAAAG---------------------------- .(((((((((((((.........)))))))))))))(((.....))).....(((((.....((((....)))).)))))............---------------------------- ( -23.00, z-score = -4.36, R) >droSim1.chr2R 3871741 92 - 19596830 AGCGGUGAAGUUAUUUCCUAUUCAUAAUUUCACUGCGACUCCAAGUCGACCAUCAGUACAUCCGCUUCUAAGUGCACUGAAAAAAUAUUAAG---------------------------- .(((((((((((((.........)))))))))))))(((.....))).....(((((.(((..........))).)))))............---------------------------- ( -23.60, z-score = -4.01, R) >droSec1.super_1 2848079 92 - 14215200 AGCGGUGAAGUUAUUUCCUAUUCAUAAUUUCACUGCGACUCCAAGUCUACCAUCAGUAUAUCCGCUUCUAAGUGCACUGAAAAAAUAGUAAG---------------------------- .(((((((((((((.........)))))))))))))(((.....))).....(((((.....((((....)))).)))))............---------------------------- ( -23.00, z-score = -3.92, R) >droYak2.chr2L 17871696 120 - 22324452 AGCGGUGAAGUUAUUUCCUAUUCAUAAUUUCACUGCGACUCCAGGUCUACCAUUUGUAUAUUCUAUUCUAAGUGCACUGUAAAAAGUGUACAGUUAUUGCAAAAUUCUUAGGCAAUAAAA .(((((((((((((.........)))))))))))))(((.....)))........................(((((((......)))))))..(((((((...........))))))).. ( -32.70, z-score = -4.30, R) >droEre2.scaffold_4929 9200413 85 + 26641161 AGCGGUGAAGUUAUUUUCUAUUCAUAAUUUCAGUGCGACUCCGAGUCCAGCAACUGUAUAUCAGGUUCUCAGUGCACUGAAAAAA----------------------------------- ....(((((...........)))))..((((((((((((.....)))......(((.....))).........)))))))))...----------------------------------- ( -19.40, z-score = -1.33, R) >droPer1.super_4 4606242 69 - 7162766 AGUGGUUAUG-CAUAUCCCAUCUAUA---UGGCUGGGUUUUUCAUUCUGUUAGAGGCUUAAACCUUGUCACAA----------------------------------------------- .((((.....-......)))).....---((((.((((((....(((.....)))....)))))).))))...----------------------------------------------- ( -13.00, z-score = 0.23, R) >consensus AGCGGUGAAGUUAUUUCCUAUUCAUAAUUUCACUGCGACUCCAAGUCUACCAUCAGUAUAUCCGCUUCUAAGUGCACUGAAAAAAUA_UAAG____________________________ .(((((((((((((.........)))))))))))))(((.....)))......................................................................... (-12.68 = -13.33 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:05 2011