| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,214,040 – 5,214,137 |
| Length | 97 |
| Max. P | 0.722884 |
| Location | 5,214,040 – 5,214,137 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 90.71 |
| Shannon entropy | 0.16817 |
| G+C content | 0.44239 |
| Mean single sequence MFE | -25.51 |
| Consensus MFE | -22.32 |
| Energy contribution | -23.12 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5214040 97 + 21146708 UGCCUGGAAAGGAUUUGGAAAACUUUCCACCGGCUUUGUCAGGGACUUUGGCUCAAAAGUAAAAAUAAAAACACAAAUGAGCCUCGAAGCUUCCACA .((((((((((...........)))))))..))).......((((((((((((((...((............))...))))))..)))).))))... ( -25.90, z-score = -1.55, R) >droSim1.chr2R 3869581 97 + 19596830 UGCCUGGAAAGGAUUUGGAAAACUUUCCACCGGCUUUGUCAGGGACUUUGGCUCAAAAGUAAAAAUAAAAACACAAAUGAGCCCCGAAGCUCCCACA .((((((((((...........)))))))..))).......((((((((((((((...((............))...))))))..)))).))))... ( -28.80, z-score = -2.19, R) >droSec1.super_1 2845945 92 + 14215200 UGCCUGGAAAGGAUUUGGAAAACUUUCCACCGGCUUUGUCAGG-ACUUUGGCU-GAAAGUAAAA--UAAAACACAAAUGAGCUCCGAAGCUCCCAC- .((((((((((...........)))))))..))).......((-(((((....-.)))))....--............(((((....)))))))..- ( -21.30, z-score = -0.51, R) >droYak2.chr2L 17869481 95 + 22324452 UGCCUGGAAAGGAUUUG-AAAACUUUCCAUUGGCUUUGUCAGGGACUUUGGCUCAAAAGUAAAAAUAAAAACACCACUUCGC-CCGAAGCUCCCUCU .((((((((((......-....)))))))..)))......(((((((((((.....((((...............))))...-)))))).))))).. ( -25.16, z-score = -1.66, R) >droEre2.scaffold_4929 9198301 96 - 26641161 UGCCUGGAAAGGAUUUG-AAAACUUUCCACCGGCUUUGUCAGGGACUUUGGCUCAAAAGUAAAAAUAAAAACACCAAUGAGCCCCGCAGCUCCCUCG .((((((((((......-....)))))))..)))......(((((((..((((((...((............))...))))))....)).))))).. ( -26.40, z-score = -1.77, R) >consensus UGCCUGGAAAGGAUUUGGAAAACUUUCCACCGGCUUUGUCAGGGACUUUGGCUCAAAAGUAAAAAUAAAAACACAAAUGAGCCCCGAAGCUCCCACA .((((((((((...........)))))))..))).......((((((((((((((...((............))...))))))..)))).))))... (-22.32 = -23.12 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:04 2011