| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,412,877 – 2,412,967 |
| Length | 90 |
| Max. P | 0.660775 |
| Location | 2,412,877 – 2,412,967 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 93.23 |
| Shannon entropy | 0.11798 |
| G+C content | 0.47475 |
| Mean single sequence MFE | -28.49 |
| Consensus MFE | -26.10 |
| Energy contribution | -26.02 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2412877 90 + 23011544 UUCAACUGG--CUCAGUUGGUGGCGCCAAAAUGUUGACUACCAAUUGGCCCACUUGUGUUUGGAGUUAGCUUGUAGUUAGACGAUAACCGAA ..(((((((--(((....(((((.((((....((((.....)))))))))))))........))))))).)))..((((.....)))).... ( -23.70, z-score = -0.47, R) >droSim1.chr2L 2371615 92 + 22036055 UUCAACUGGCGCUCAGUUGGUGGCGCCAAAAUGUUGACUAGUAAUUGGCCCACUUGUGGUUGGAGUUAGCUUGUAGUUAGACGAUAACCGAA ..((((((.....))))))((((.(((((...............)))))))))...((((((..((((((.....))).)))..)))))).. ( -27.16, z-score = -0.99, R) >droSec1.super_5 586164 92 + 5866729 UUCAACUGGCGCUCAGUUGGUGGCGCCAAAAUGUUGACUAGCAAUUGGCCCACUUGUGGUUGGAGUUAGCCUGUAGUUAAACGAUAACCGAA ..((((((.....))))))((((.(((((..(((......))).)))))))))...((((((..((((((.....))).)))..)))))).. ( -28.90, z-score = -1.28, R) >droYak2.chr2L 2398965 91 + 22324452 UUCAACUCA-GCUCAGUUGGUGGCGCCAAAAUGUUGACUAGCAAUUGGCCCACUUGCGGUUGAAGUUAGCUUGUAGUUAGCCGAUAACCGAA ..(((((..-....)))))((((.(((((..(((......))).)))))))))...((((((..((((((.....))))))...)))))).. ( -29.00, z-score = -1.79, R) >droEre2.scaffold_4929 2454861 90 + 26641161 UUCAACUGG--CUCAGUUGGUGGCGCCAAAAUGUUGACUAGCAAUUGGCCCACUUGUGGUUGGGGUUAGCUUGUGGUUAGCCGAUAACCGAA ..((((((.--..))))))((((.(((((..(((......))).)))))))))...((((((.(((((((.....)))))))..)))))).. ( -33.70, z-score = -2.09, R) >consensus UUCAACUGG_GCUCAGUUGGUGGCGCCAAAAUGUUGACUAGCAAUUGGCCCACUUGUGGUUGGAGUUAGCUUGUAGUUAGACGAUAACCGAA ..((((((.....))))))((((.((((....((((.....))))))))))))...((((((..((((((.....))))).)..)))))).. (-26.10 = -26.02 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:10 2011