| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,207,643 – 5,207,753 |
| Length | 110 |
| Max. P | 0.616363 |
| Location | 5,207,643 – 5,207,753 |
|---|---|
| Length | 110 |
| Sequences | 7 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 87.78 |
| Shannon entropy | 0.22445 |
| G+C content | 0.55458 |
| Mean single sequence MFE | -45.81 |
| Consensus MFE | -33.44 |
| Energy contribution | -34.31 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5207643 110 + 21146708 CUGCUGACCACCGCUGGUGCCG---CGCUCCAUGCGGUAGUAGUACUGCCGGGGGUAUCUAUGGUAGUAAUGUGCAAUUGUGGUGCUGGUAUGUGGUUAUGUGG----AGUGGAUCA- (..((((((((.((..(..(((---((((((...((((((.....))))))))))).......(((......)))....))))..)..))..))))))).)..)----.........- ( -43.10, z-score = -1.18, R) >droSim1.chr2R_random 1680989 110 + 2996586 CUGCUGACCACCGCUGGUGCCG---CGCUCCAUGCGGUAGUAGUACUGCCGGGGGUAUCUAUGGUAGUAAUGUGCAAUUGUGGUGCUGGUAUGUGGUUAUGUGG----AGUGGAUCA- (..((((((((.((..(..(((---((((((...((((((.....))))))))))).......(((......)))....))))..)..))..))))))).)..)----.........- ( -43.10, z-score = -1.18, R) >dp4.chr3 9275400 118 + 19779522 CUGCUGACCACCGCUGGUGCCGCCGCGCUCCAUGCGGUAGUAGUACUGCCUGGGGUAUCUAUGGUAGUAAUGUGCAAUUGUGGUGCUGGUAUGUGGUUUGGUGGUAUCAGAGGAUCAG ...((((...((.((((((((((((.((..((((((((((.....)))))...((((.(((..((.((.....)).))..))))))).)))))..)).)))))))))))).)).)))) ( -50.10, z-score = -2.29, R) >droPer1.super_4 4597780 118 + 7162766 CUGCUGACCACCGCUGGUGCCGCCGCGCUCCAUGCGGUAGUAGUACUGCCUGGGGUAUCUAUGGUAGUAAUGUGCAAUUGUGGUGCUGGUAUGUGGUUUGGUGGUAUCAGAGGAUCAG ...((((...((.((((((((((((.((..((((((((((.....)))))...((((.(((..((.((.....)).))..))))))).)))))..)).)))))))))))).)).)))) ( -50.10, z-score = -2.29, R) >droWil1.scaffold_180697 3328827 108 - 4168966 GUGCUGACCACCGCUGGUGCCG---CGCUCCAUGCGGUAGUAGUACUGCCGUGGGUAUCUAUGGUAGUAAUGUGCAAUUGUGGUGCUGGUAUUUGGUAGGGCGGUGU-GGCG------ ..(((...((((((((((((((---.((.((..(((((.(((.(((((((((((....)))))))))))...))).))))))).)))))))))......))))))).-))).------ ( -45.10, z-score = -1.23, R) >droVir3.scaffold_12875 1250583 104 + 20611582 CUGCUGACCACCGCUGGUGCCG---CGCUCCAUGCGGUAGUAAUACUGCCGUGGGUAUCUAUGGUAGUAAUGUGCAAUUGUGGUGCUGGUAUGUGG----AUGGUGU-GACG------ ..((((.((((.((..(..(((---(((.....))....(((.(((((((((((....)))))))))))...)))....))))..)..))..))))----.))))..-....------ ( -42.20, z-score = -2.02, R) >droMoj3.scaffold_6496 4319550 104 + 26866924 CUGCUGACCACCGCUGGUGCCG---CGCUCCAUGCGGUAGUAAUACUGCCGUGGGUAUCUAUGGUAGUAAUGUGCAAUUGUGGUGCUGGUAUGUGG----GUGGUGU-GGCG------ ..((((((((((((..(..(((---(((.....))....(((.(((((((((((....)))))))))))...)))....))))..)..)).....)----))))).)-))).------ ( -47.00, z-score = -2.69, R) >consensus CUGCUGACCACCGCUGGUGCCG___CGCUCCAUGCGGUAGUAGUACUGCCGGGGGUAUCUAUGGUAGUAAUGUGCAAUUGUGGUGCUGGUAUGUGGUU_GGUGGUGU_AGCGGAUCA_ ((((..(((((.((..(..((....(((.....)))...(((.((((((((.((....)).))))))))...)))......))..)..))..)))))...)))).............. (-33.44 = -34.31 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:03 2011