| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,196,017 – 5,196,110 |
| Length | 93 |
| Max. P | 0.912161 |
| Location | 5,196,017 – 5,196,110 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 88.07 |
| Shannon entropy | 0.20464 |
| G+C content | 0.56134 |
| Mean single sequence MFE | -35.94 |
| Consensus MFE | -27.26 |
| Energy contribution | -28.42 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.912161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5196017 93 + 21146708 UUAUUUUGGUUUCGUUCCGAUGCAGGGCGAAAGCGCGGGGGCCACAGGCGGAACUAUCAGCUCAGCUGCUUUUUC---UAGUCGGCUGACAACACU .....(((((...(((((......(.((....)).)....(((...)))))))).))))).(((((((((.....---.)).)))))))....... ( -29.30, z-score = -0.75, R) >droEre2.scaffold_4929 9180145 90 - 26641161 UUAUUUUGGUUCCGUUUAGCAUC-GGGCGAAAGC--GGGGGCCAAAGGCGGAACUAUCAGCUCAGCUGCUUCGAC---UAGUCGGCUGACAACACU ......(((((((((((.((.((-..((....))--..))))...)))))))))))...(.(((((((((.....---.)).))))))))...... ( -31.10, z-score = -1.91, R) >droYak2.chr2L 17851518 89 + 22324452 UUAUUUUGGUUCCGUUC-GCUUC-UGGCGAAAGC--GGGGGCCAAAGGCGGAACUAUCAGCUCAGCUGCUUCGGC---UGGUUGGCUGACAACACU ......((((((((((.-(((((-((.(....))--))))))....))))))))))(((((.(((((((....))---.))))))))))....... ( -41.10, z-score = -4.31, R) >droSec1.super_1 2828096 96 + 14215200 UUAUUUUGGUUCCGUUCCGCUGCAGGGCGAAAGCGCGGUGGCCACAGGGGGAACUAUCAGCUCAGCUGCUUCGGCGGCAAGUCGGCUGACAACACU ......(((((((...(((((((...((....)))))))))((....)))))))))((((((..(((((....))))).....))))))....... ( -41.80, z-score = -2.75, R) >droSim1.chr2R 3854945 93 + 19596830 UUAUUUUGGUUCCGUUCCGCUGCAGGGCGAAAGCGCGGGGGCCACACGGGGAACUAUCAGCUCAGCUGCUUCGGC---AAGUCGGCUGACAACACU ......(((((((...((.((((...((....)))))).))((....)))))))))((((((..(((((....))---.))).))))))....... ( -36.40, z-score = -1.94, R) >consensus UUAUUUUGGUUCCGUUCCGCUGCAGGGCGAAAGCGCGGGGGCCACAGGCGGAACUAUCAGCUCAGCUGCUUCGGC___UAGUCGGCUGACAACACU ......((((((((((..(((((.(.((....)).).)))))....))))))))))...(.(((((((((.........)).))))))))...... (-27.26 = -28.42 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:59 2011