| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,193,973 – 5,194,093 |
| Length | 120 |
| Max. P | 0.924111 |
| Location | 5,193,973 – 5,194,093 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.83 |
| Shannon entropy | 0.25374 |
| G+C content | 0.30697 |
| Mean single sequence MFE | -19.30 |
| Consensus MFE | -16.86 |
| Energy contribution | -17.34 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5193973 120 - 21146708 UAAAAGCCGCAAACAACAGAACUUAAACUAUAGAAAAUGCCAAUCAGUUAAGAACGAAAUUUUCUUAUUUAUUUGCACAAUGGGGAUUCACCCAGCAAAAACUGUUGUCAUUAAUAAAAA ............(((((((............(((((((.....((......)).....)))))))......(((((....((((......)))))))))..)))))))............ ( -21.80, z-score = -2.18, R) >droSim1.chr2R 3852841 120 - 19596830 AAAUAGCCGCAAACAACAGAACAUAAACUAUAGAAAAUUACAAUCAUUGAAGAACGAAAUUUUCUUAUUUAUUUGCACAAUGGGGAUUCACACAGCAAAAACUGUUGUCAUUAAUAAAAA ............(((((((............((((((((.(..((......))..).))))))))......(((((....((........))..)))))..)))))))............ ( -15.60, z-score = -0.91, R) >droSec1.super_1 2826013 120 - 14215200 UAAUAGCCGCAAACAACAGAACAUUAACUAUAGAAAAUGACAAUCAUUUAAGAACGAAAUUUUCUUAUUUAUUUGCACAAUGGGGAUUCACCCAGCAAAAACUGUUGUCAUUAAUAAAAA ............(((((((............(((((((.....((......)).....)))))))......(((((....((((......)))))))))..)))))))............ ( -21.80, z-score = -2.93, R) >droYak2.chr2L 17849406 110 - 22324452 UAUUAACCGCAACUAACAGACCAUAAACUAUAGAAAACGCCAAUCAUUUAAGAAAGAAGUCUUCUUAUUUAUUUGCAUUAUGGGGAUUAUCCCAACAAAAACUGUUGUCA---------- .............((((((..(((((.(....).....((.(((.(..((((((.(....)))))))..)))).)).)))))(((.....)))........))))))...---------- ( -16.60, z-score = -0.96, R) >droEre2.scaffold_4929 9177990 120 + 26641161 UAAUAGCCGCAAGCAACAGAACAUAGACUAUAGAAAACGCCAAUAAUUUAGAUACGAAGUUUUCUUAUUUAUUUGCACAAUGGGGAUUCACCCAACAGAAACUGUUGUCAUUCAUAAAAA ............(((((((...................((.(((((...(((..........)))...))))).))....((((......)))).......)))))))............ ( -20.70, z-score = -1.72, R) >consensus UAAUAGCCGCAAACAACAGAACAUAAACUAUAGAAAAUGCCAAUCAUUUAAGAACGAAAUUUUCUUAUUUAUUUGCACAAUGGGGAUUCACCCAGCAAAAACUGUUGUCAUUAAUAAAAA ............(((((((............(((((((.....((......)).....)))))))......(((((....((((......)))))))))..)))))))............ (-16.86 = -17.34 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:59 2011