| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,187,372 – 5,187,478 |
| Length | 106 |
| Max. P | 0.943813 |
| Location | 5,187,372 – 5,187,478 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 125 |
| Reading direction | forward |
| Mean pairwise identity | 76.14 |
| Shannon entropy | 0.38347 |
| G+C content | 0.45340 |
| Mean single sequence MFE | -29.45 |
| Consensus MFE | -18.52 |
| Energy contribution | -18.72 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5187372 106 + 21146708 AUGGCUGGUUGGAGACGUCGAAGAAUAUCACU-------------------GCACCGUCUGCAGCCAGCUUAACGAAUUCUGAAUUCGCAAAAUUCAAUUCAAACGCCCCAAAAUUUAGCCCACA ..(((((((((.(((((..(.((.......))-------------------.)..))))).)))))))))....((((..((((((.....))))))))))........................ ( -28.40, z-score = -2.36, R) >droEre2.scaffold_4929 9171028 124 - 26641161 AUGGCUAGUUGGAGACGUUCAGGCGGCGUGCUUGCCACAUAGAAUGUCACUGCACCGUCUGCAGCCAGCU-AACGAAUUCAAAAUUCGUAAGAUUCGAUUUCAAGUCCCCAAAAUUCAGUCCACA .(((.(((((((.(((((((..(.((((....)))).)...))))))).(((((.....)))))))))))-)((((((.....))))))..((((.(....).)))).))).............. ( -36.30, z-score = -2.13, R) >droYak2.chr2L 17842342 105 + 22324452 AUUGCU-GUUUUAGACGUUGAGGCGACGUGCU-------------------GAACCGUCUGCAGCUAGUUUAACGAACUCAAAAUUGGUUAAAUUUGAAUUCAACUCCCCGAAAUUUAGCCCACA ...(((-((...(((((.(..(((.....)))-------------------..).)))))))))).(((((...))))).......((((((((((...............)))))))))).... ( -22.46, z-score = -0.61, R) >droSec1.super_1 2819635 105 + 14215200 AUGGCUGGUUGGAGACGUCGAAGAUUAUCACU-------------------GCACCGUCUGCAGCCAGCUUAACGAAUUCAGAAUUCGAAAAAUUCAAUUCAAACGCCC-AAAAUUCAGCCCACA ..(((((((((.(((((..(.((.......))-------------------.)..))))).)))))))))....(((((..(((((.....))))))))))........-............... ( -27.70, z-score = -2.30, R) >droSim1.chr2R 3846411 106 + 19596830 ACGGCUGGUUGGAGGCGUCAAGGAUUAUCACU-------------------GCACCGUCUGCAGCCAGCUUAACGAAUUCAGAAUUCGAAAAAUUCAAUUCAAACGCCCCAAAAUUCAGCCCACA ..((((((((((.(((((...(((((....((-------------------(((.....))))).........(((((.....)))))........)))))..)))))))))...)))))).... ( -32.40, z-score = -3.18, R) >consensus AUGGCUGGUUGGAGACGUCGAGGAGUAUCACU___________________GCACCGUCUGCAGCCAGCUUAACGAAUUCAGAAUUCGAAAAAUUCAAUUCAAACGCCCCAAAAUUCAGCCCACA ..(((((((((.(((((......................................))))).)))))))))....(((((..(((((.....))))))))))........................ (-18.52 = -18.72 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:58 2011