| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,185,497 – 5,185,606 |
| Length | 109 |
| Max. P | 0.586777 |
| Location | 5,185,497 – 5,185,606 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 74.42 |
| Shannon entropy | 0.49368 |
| G+C content | 0.31094 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -9.00 |
| Energy contribution | -9.67 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5185497 109 - 21146708 UGACUGUCAUUUAAAUCUCUAAAUAGCAUUUUUCUUUU---GUUUAAUUUUUACGUCUUACGUUUUUGUUUACAAUUCAAUGCUAGCAGCGGAAAUCUUAAUAGCUUGCCAA .......................(((((((......((---((..(((....(((.....)))....))).))))...)))))))(((((.............)).)))... ( -13.92, z-score = 0.45, R) >droSim1.chr2R 3844555 109 - 19596830 UGGCUGUCAUUUAAAUCUCUAAAUAGCAUUUUUCUUUU---GUUUAAUUUUUACGUCUUAUGUUUUUGUUUACAAUUCAAUGCUAGCAGCGGAAAGCUUAAUAGCUUUCCGA ..(((((..((((......))))(((((((......((---((..(((....((((...))))....))).))))...))))))))))))((((((((....)))))))).. ( -26.20, z-score = -3.44, R) >droSec1.super_1 2817749 109 - 14215200 UGGCUGUCAUUUAAAUCUGUAAAUAGCAUUUUUCUUUU---GUUUAAUUUUUACGUCUUACGUUUUUGUUUACAAUUCAAUGUUAGCAGCGGAAAGCUUAAUAGCUUUCCGA ..((((.((((.((...(((((((((((.........)---)).........(((.....)))...)))))))).)).)))).))))..(((((((((....))))))))). ( -25.90, z-score = -3.31, R) >droYak2.chr2L 17840480 109 - 22324452 UGGCUGUCAUUUAAAUCCCAAAAUAGCAUUUUCCAUUU---GUUUAAUUUUUACGUGUUACGUUUUUGUUUAUAGUUUAAUGUUAGCAGUGAAAAGCUUAAUGGCUUUUCGA ..(((((................(((((((......((---((..(((....(((.....)))....))).))))...))))))))))))((((((((....)))))))).. ( -18.79, z-score = -0.70, R) >droEre2.scaffold_4929 9169170 109 + 26641161 UGGCUGUCAUUUAAAUCUCGAUGUAGCAUUUUCCUUUU---GUUUAACUUUUACAUGUUACGCUUUUGUUUACAAUUAAAUGUUAGCAGUGGAAAGCUUAAUAGCUUUCCCA ..((((.(((((((........(((((((.........---.............)))))))....(((....)))))))))).)))).(.((((((((....))))))))). ( -25.85, z-score = -2.88, R) >dp4.chr4_group3 11222864 108 + 11692001 UGCCUGUUGUACAAACGUUUCUAUAGCCCAUUCAUUAUUACGACUCAUUUUUUCGUUGCCGACCCUCGGAAAUAUAGGAAUGGUAACGAUAAUAAAAAUAUGUACAUA---- .......((((((..(((....((((........)))).)))....(((((((((((((((..(((.........)))..)))))))))....)))))).))))))..---- ( -20.50, z-score = -0.96, R) >consensus UGGCUGUCAUUUAAAUCUCUAAAUAGCAUUUUCCUUUU___GUUUAAUUUUUACGUCUUACGUUUUUGUUUACAAUUCAAUGUUAGCAGCGGAAAGCUUAAUAGCUUUCCGA ..(((((................(((((((...........((.........))...........(((....)))...))))))))))))((((((((....)))))))).. ( -9.00 = -9.67 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:57 2011