| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,156,614 – 5,156,725 |
| Length | 111 |
| Max. P | 0.984412 |
| Location | 5,156,614 – 5,156,725 |
|---|---|
| Length | 111 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 61.83 |
| Shannon entropy | 0.70975 |
| G+C content | 0.36420 |
| Mean single sequence MFE | -23.69 |
| Consensus MFE | -11.33 |
| Energy contribution | -11.97 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.17 |
| SVM RNA-class probability | 0.984412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5156614 111 + 21146708 AGAUAUCAGAAUG--AAGUUAA----ACUGUUUGAUAGGCGAAAGUCUGCUUGAAUGGAAAGCCAGUUGGCAACCAAAAUCAAAAGGAAUUCAAUUAAACGCGUUGAUUUAAUGCAC .((..((....((--(......----.(((((..((((((....))))).)..)))))...(((....)))........)))....))..))........((((((...)))))).. ( -24.20, z-score = -1.37, R) >droSim1.chr2R_random 1643679 115 + 2996586 AGAUAUCAAAAUG--AAGUUAACCAAACUGUUUGAUAGGCGAAAGUCUGCUUGAAUGGAAAGCCAGUUGGCAACCAAAAUCAAAGAGAAUUCAAUUAAACGCGUUGAUUAAAUUCAC ...........((--((.((((.(((..((((((((((((....))))..((((.(((...(((....)))..)))...))))..........))))))))..))).)))).)))). ( -25.30, z-score = -2.09, R) >droSec1.super_1 2788683 115 + 14215200 AGAUAUCAGAAUG--AAGUUAACUAAACUGUUUGAUAGGCGAAAGUCUGCUUGAAUGGAAAGCCAGUUGGCAACCAAACUCAAAAGGAAUUCAAUUAAACGCGUUGAUUAAAUUCAC ........((((.--.(((((((....(((((..((((((....))))).)..)))))...(((....)))...............................)))))))..)))).. ( -26.60, z-score = -2.08, R) >droYak2.chr2L 17811297 115 + 22324452 AGAUAUCAGAACA--UAGUUAACUUAACAGCUUGAUAGGCGAAAGUCUGAUUGAAUGGAAAGCCUGUUGGCAACCAAAAUCAAAAGAAAUAUAAAUAAACGCGUUCAUUAUAUGCAC ........((((.--..((((...)))).((.....((((....))))((((...(((...(((....)))..))).))))...................))))))........... ( -22.50, z-score = -1.61, R) >droEre2.scaffold_4929 9139908 117 - 26641161 AGUUAUCAGAACAUUAACUUAACUUAACUGUUUGAUAGGCGAAAGUCUGCUUGAAUGGAAAGUCAGUUGGCAACAAAAAUCAAAAGGAAUUAAAUUAAACGCAUUCAUUAUAUGCAC (((((.........)))))...(((..(((((..((((((....))))).)..)))))...(....(((....)))....)..)))..............((((.......)))).. ( -20.90, z-score = -0.90, R) >dp4.chr3 9224493 85 + 19779522 -------------------------AACGAUCUGGGAUUCCUGCUCGGAAUCGGAAUC------CAAUGACAACUGAAAGUUUCAAUUGUUGAAUGGAAAGU-UCCAUCGAAUGAAC -------------------------..((((....((((((.....))))))((((((------((..(((((.(((.....))).)))))...))))...)-)))))))....... ( -22.90, z-score = -1.54, R) >droPer1.super_4 4547697 91 + 7162766 -------------------------AACGAUCUGGGAUUCCUGCUCGGAAUCGGAAUCGGAAUCCAAUGACAACUGAAAGUUUCAAUUGUUGAAUGGAAAGU-UCCAUCGAAUGAAC -------------------------..((((....((((((.....))))))(((((.....((((..(((((.(((.....))).)))))...))))..))-)))))))....... ( -23.40, z-score = -0.86, R) >consensus AGAUAUCAGAAUG__AAGUUAAC__AACUGUUUGAUAGGCGAAAGUCUGCUUGAAUGGAAAGCCAGUUGGCAACCAAAAUCAAAAGGAAUUCAAUUAAACGCGUUCAUUAAAUGCAC ...........................(((((((((((((....))))).))))))))...(((....)))...............(((((.((((((.....)))))).))))).. (-11.33 = -11.97 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:54 2011