| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,411,016 – 2,411,116 |
| Length | 100 |
| Max. P | 0.947297 |
| Location | 2,411,016 – 2,411,116 |
|---|---|
| Length | 100 |
| Sequences | 13 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 66.95 |
| Shannon entropy | 0.76666 |
| G+C content | 0.45450 |
| Mean single sequence MFE | -25.57 |
| Consensus MFE | -13.80 |
| Energy contribution | -13.46 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2411016 100 - 23011544 CUAAUUGGUUGGUGUGAGCCCAAGGACUCGGAGUAUGUGCUAAUGGGCGAACACUGUUCACACAAGUAAGGAAUACA---UUUGUCACACAUUCCUAUAGAUA (((...((...(((((((((((((.((.........)).))..)))))((((...))))..................---....))))))...))..)))... ( -25.10, z-score = -0.40, R) >droMoj3.scaffold_6500 30849004 90 + 32352404 CUGAUAGGAUGGUGCGAGCCCAAGGACUCGGAGUAUGUGCUCAUGGGCGAGCACUGUUCGCACAAGUAAGUCG---A---CUUGACAAAUAUUCGA------- ......(((((((((..(((((.(..(.((.....)).)..).)))))..)))))))))...(((((......---)---))))............------- ( -29.90, z-score = -1.70, R) >droVir3.scaffold_12963 9751495 101 - 20206255 CUGAUAGGCUGGUGCGAGCCUAAGGACUCCGAUUAUGUGCUCAUGGGCGAGCACUGUUCGCAUAAGUAAGCAUAAAU-GAAUCUAU-AAUAUCAUAUUUUCGA .......(((.((((((((....((...))......((((((......)))))).)))))))).....))).....(-(((..(((-......)))..)))). ( -25.20, z-score = -0.27, R) >droWil1.scaffold_180703 2918819 95 - 3946847 CUGAUAGGUUGGUGUGAGCCAAAGGAUUCGGAGUAUGUGCUAAUGGGUGAACAUUGUUCAAACAAGUAAGUAAA------UAUCAUAGUCAUUUACAACUG-- ((((....(((((....))))).....))))(((...((((..((..(((((...)))))..)))))).(((((------(.........)))))).))).-- ( -18.90, z-score = -0.17, R) >droPer1.super_10 676965 100 - 3432795 CUGAUAGGCUGGUGCGAGCCCAAGGAUUCCGAGUACGUUCUGAUGGGCGAGCACUGCUCACAUAAGUGAGUACUGAACCAUGUCGUCGUUAUCCCAAACA--- ..(((.(((((((((..(((((.(((...((....)).)))..)))))..))..(((((((....)))))))....)))).))))))(((......))).--- ( -32.50, z-score = -1.39, R) >dp4.chr4_group4 1673296 100 - 6586962 CUGAUAGGCUGGUGCGAGCCCAAGGAUUCCGAGUACGUUCUGAUGGGCGAGCACUGCUCACAUAAGUGAGUACUGAACCAUGUCGUCGUUAUCCCAAAUA--- ..(((.(((((((((..(((((.(((...((....)).)))..)))))..))..(((((((....)))))))....)))).)))))).............--- ( -32.30, z-score = -1.53, R) >droAna3.scaffold_12916 9577215 88 - 16180835 CUGAUUGGCUGGUGUGAGCCGAAGGACUCGGAGUACGUGCUAAUGGGCGAGCAUUGCUCUCACAAGUGAGUAGAAAU---AUUUACGAAUA------------ ((.((((((...((((..((((.....))))..)))).)))))).)).((((...))))......(((((((....)---)))))).....------------ ( -27.70, z-score = -2.15, R) >droEre2.scaffold_4929 2452980 100 - 26641161 CUAAUUGGUUGGUGCGAGCCCAAGGACUCGGAGUAUGUGCUAAUGGGCGAACACUGUUCACACAAGUUAGUAACACU---UUUGACACACAUUCCCCUAAAUA ......((...(((((((((...)).))))((((...(((((((..(.((((...)))).)....)))))))..)))---)......)))...))........ ( -21.00, z-score = 0.82, R) >droYak2.chr2L 2397099 100 - 22324452 CUAAUAGGUUGGUGUGAGCCCAAGGACUCGGAGUAUGUGCUAAUGGGCGAGCACUGUUCACACAAGUAAGCUACACC---UUUAACACAGAUUCCUAUAUAAA ...(((((..(((((..(((((((.((.........)).))..)))))..)))))(((.((....)).)))......---.............)))))..... ( -23.60, z-score = 0.10, R) >droSec1.super_5 584172 100 - 5866729 CUAAUUGGUUGGUGUGAGCCCAAGGACUCGGAGUAUGUGCUAAUGGGCGAACACUGUUCUCACAAGUAAGGAAUACC---UUAAACACACAUUUUAUUGAAUA ....(..((..(((((.(((((((.((.........)).))..)))))((((...)))).......(((((....))---)))..))))).....))..)... ( -23.50, z-score = -0.50, R) >droSim1.chr2L_random 122689 98 - 909653 CUUAUUGGUUGGUGUGAGCCCAAGGACUCGGAGUAUGUCCUUAUGGGCGAACACUGCUCUCACAAGUAAGGAAUACC---UUUAU--AACAUUCCUAUGAAUA .((((.((..(((((..((((((((((.........)))))..)))))..)))))..........((((((.....)---)))))--......)).))))... ( -27.70, z-score = -1.54, R) >anoGam1.chr3R 49426470 102 + 53272125 CUGCUUGGGUGGUGCGAACCGAAAGACUCCGAGUACGUCCUCAUGGGAGAACAUCUAUCAAGACAGUGAGUA-UGGAUCGUGUUACAUCCCUAGCAAAAGCCA .((((.((((((..(((.(((....(((((..((.(..((....))..).)).(((....)))..).)))).-))).)))..)))...))).))))....... ( -26.80, z-score = -0.01, R) >triCas2.ChLG4 12211121 82 - 13894384 AUGACGGGUUUUUGUAGCCCUAAGGACGAGGAGUACGUUUUGAUGGGCGAACAUGUGACACAUAAGUAAUUGAU------UUUUCCCA--------------- .....(((((..(((.((((..((((((.......))))))...))))..)))...)))...(((....)))..------.....)).--------------- ( -18.20, z-score = -0.32, R) >consensus CUGAUAGGUUGGUGUGAGCCCAAGGACUCGGAGUAUGUGCUAAUGGGCGAACACUGUUCACACAAGUAAGUAAUACA___UUUUACAAACAUUCCAAUAA__A ......((..(((((..(((((((.((.........)).))..)))))..)))))..))............................................ (-13.80 = -13.46 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:09 2011