| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,122,199 – 5,122,287 |
| Length | 88 |
| Max. P | 0.909026 |
| Location | 5,122,199 – 5,122,287 |
|---|---|
| Length | 88 |
| Sequences | 12 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 69.73 |
| Shannon entropy | 0.63095 |
| G+C content | 0.67104 |
| Mean single sequence MFE | -34.87 |
| Consensus MFE | -17.10 |
| Energy contribution | -17.88 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.909026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5122199 88 - 21146708 GGAGACCGCUGCUGCUCAUCACCGCCGCCGCGGGGACAGUCACGCUGCAGAGCUCGACCAGCGUGACCGGAGCCCGCGAUGGCGCCGC------ ((.....((....)).......(((((.((((((..(.(((((((((..(....)...))))))))).)...)))))).)))))))..------ ( -40.50, z-score = -0.77, R) >droSim1.chr2R 3787879 85 - 19596830 GGAGACC---GCUGCUCAUCACCGCCGCCGCGGGGACAGUCACGCUGCAGAGCUCGACCAGCGUGACCGGAGCCCGCGAUGGCGCCGC------ .(((...---....))).....(((((.((((((..(.(((((((((..(....)...))))))))).)...)))))).)))))....------ ( -39.10, z-score = -0.88, R) >droSec1.super_1 2753630 85 - 14215200 GGAGACC---UCUGCUCAUCACCGCCGCCGCGGGGACAGUCUCGCUGCAGAGCUCGACCAGCGUGACCGGAGCCCGCGAUGGCGCCGC------ .(((...---....))).....(((((.((((((..(.(((.(((((..(....)...))))).))).)...)))))).)))))....------ ( -35.10, z-score = 0.24, R) >droEre2.scaffold_4929 9105203 85 + 26641161 GGAGUCC---ACUGCUCAUCACCGCCGUCGCGGGGACAGUCACGCUGCAGAGCUCGACCAGCGUGACCGGAGCCCGCGUUGGCGUCGC------ .((((..---...)))).....(((((.((((((..(.(((((((((..(....)...))))))))).)...)))))).)))))....------ ( -40.80, z-score = -1.57, R) >droAna3.scaffold_13266 11433239 88 + 19884421 AGAGUCGAGUUCUGGCCACCAUCGCCGACGCGGGGACAGUCACGCUGCAGAGCUCGACCAGCGUGACCGGAGCCCGCGUUGGCGUCGC------ .(.((((.....))))).....((((((((((((..(.(((((((((..(....)...))))))))).)...))))))))))))....------ ( -43.80, z-score = -2.24, R) >dp4.chr3 9188047 85 - 19779522 --AGAGACCUCUGGC-CAUCAUCGCCGACGCGGUGACAGUCACGAUGCAGAGCUCGACCAGCGUGACCUGAAUCCGCGUUGGCGCAGC------ --(((....)))...-......(((((((((((...((((((((.((..(....)...)).))))).)))...)))))))))))....------ ( -33.00, z-score = -1.11, R) >droPer1.super_4 4510978 85 - 7162766 --AGAGACCUCUGGC-CAUCAUCGCCGACGCGGUGACAGUCACGAUGCAGAGCUCGACCAGCGUGACCUGAAUCCGCGUUGGCGCAGC------ --(((....)))...-......(((((((((((...((((((((.((..(....)...)).))))).)))...)))))))))))....------ ( -33.00, z-score = -1.11, R) >droWil1.scaffold_181009 1756517 76 + 3585778 ------------GACACAUCAUCGCCGCCGUGGUGACAGUCACGAUGCAGAGCUCGACCAGCGUGACAUCACUGCGCGUUGGCGUCGC------ ------------..........((((((((..((((..((((((.((..(....)...)).)))))).))))..)).).)))))....------ ( -27.60, z-score = 0.13, R) >droVir3.scaffold_12875 14405366 70 - 20611582 ------------GGAGCACCAUCGUCGACGCGGUGACAGUCACGCUGCAGAGCUCGACCAGCGUGACAUGGAAUCGCGUUGG------------ ------------((....)).....(((((((((..(((((((((((..(....)...))))))))).))..))))))))).------------ ( -33.40, z-score = -3.07, R) >droGri2.scaffold_15245 14387249 82 - 18325388 ------------GGAUCAUCAUCGUCGACGCGGUGACAGUCACGCUGCUGAGCUCGACCAGCGUGACUUGGAACCGCGUCCCUGGCAUCGACGU ------------..........((((((.(((((..(((((((((((.((....))..))))))))).))..)))))((.....)).)))))). ( -37.20, z-score = -2.38, R) >droMoj3.scaffold_6496 9866569 70 - 26866924 ------------GGAGCACCAUCGCCGACGCGGUGACAGUCACGCUGCAGAGCUCGACCAGCGUGACAUGGAAUCGCGUUGG------------ ------------((....))....((((((((((..(((((((((((..(....)...))))))))).))..))))))))))------------ ( -35.50, z-score = -3.81, R) >anoGam1.chr2R 11265749 74 - 62725911 ----------AGAGGGCGCCACGAUCGAUCC---GACCGCAACGCAGCAGGACCGUACAGGCGAGAGCGGCGAUCAUA-CGGAGCUGU------ ----------....(((.((..(((((..((---..((((......)).)).........((....)))))))))...-.)).)))..------ ( -19.40, z-score = 1.29, R) >consensus __AG_______CGGCUCAUCAUCGCCGACGCGGUGACAGUCACGCUGCAGAGCUCGACCAGCGUGACCGGAGCCCGCGUUGGCGCCGC______ ........................(((.((((((....((((((.((..(....)...)).)))))).....)))))).)))............ (-17.10 = -17.88 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:52 2011