| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,106,216 – 5,106,327 |
| Length | 111 |
| Max. P | 0.649465 |
| Location | 5,106,216 – 5,106,327 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.83 |
| Shannon entropy | 0.49786 |
| G+C content | 0.40800 |
| Mean single sequence MFE | -28.93 |
| Consensus MFE | -11.45 |
| Energy contribution | -11.82 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.649465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5106216 111 + 21146708 UUUCGCUUUGUUGAUUUACGAUUGAGCUUUGUGGCAGGAGGGGUUCAAACCACGAUGCUGUAUGGAUUGUGUGCAAUAAACGGAAAUACCUUUAAUAUCAUAACUGGGCGU--------- (((((.(((((((...(((((((.(((.((((((...(((...)))...)))))).))).....)))))))..))))))))))))...(((..............)))...--------- ( -24.54, z-score = 0.28, R) >droYak2.chr2L 17761031 87 + 22324452 UUCUGCUUUGUUUAUUUACGAUUGAGUUAUUUGGAAGAAGGGGUUUGAACUACGA-GUUGAAACCCCUUUAAUAUCCAAACUGGCAUG-------------------------------- .((....((((......))))..))((((((((((.((((((((((.(((.....-))).))))))))))....)))))).))))...-------------------------------- ( -26.80, z-score = -4.06, R) >droSec1.super_1 2738091 111 + 14215200 UUCCGCUUAGUUGAUUUACGAUUGAGCCAUGUGGCAGGAGGGGUUCAAACCACGAUGGUGAAUGGAUUGUGUGCAAUAAACGGAAAUACCUUUAAUAUCAUAACUGGGCGG--------- ..(((((((((((((((((.((((.(((....)))....((........)).)))).))))))(((((.(((.......)))..))).))..........)))))))))))--------- ( -32.60, z-score = -1.92, R) >droSim1.chr2R 3770832 120 + 19596830 UUCCGCUUAGUUGAUUUACGAUUGAGCGAUGUGGUAAGAGGGGUUCAAACCACGAUGGUGAAUGGAUUGUGUGCAAUAAACGGAAAUACCUUUAAUAUCAUAACUGCAAAAAGAGUGCGG ...((((((((((.....)))))))))).((((((((((((..(((..(((.....)))...((.((((....))))...)))))...)))))..))))))).(((((.......))))) ( -31.80, z-score = -1.94, R) >consensus UUCCGCUUAGUUGAUUUACGAUUGAGCUAUGUGGCAGGAGGGGUUCAAACCACGAUGGUGAAUGGAUUGUGUGCAAUAAACGGAAAUACCUUUAAUAUCAUAACUGGGCG__________ (((((((((((((.....)))))))))..(((((...(((...)))...)))))...........................))))................................... (-11.45 = -11.82 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:47 2011