| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,100,175 – 5,100,265 |
| Length | 90 |
| Max. P | 0.548600 |
| Location | 5,100,175 – 5,100,265 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 83.74 |
| Shannon entropy | 0.30091 |
| G+C content | 0.43616 |
| Mean single sequence MFE | -15.20 |
| Consensus MFE | -11.53 |
| Energy contribution | -11.52 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5100175 90 - 21146708 CAUGUGUGAACAAUGGCUGUCGGCAAAAGUUGUAAACC-UUUUUCGGCACUUAUCUGUCACACGUCACACGGCGCCAACAUCAUUUGUCAA .((((((((...((((.((((((.(((((........)-)))))))))).))))...)))))))).....((((...........)))).. ( -21.00, z-score = -0.40, R) >droSim1.chr2R 3763577 70 - 19596830 --------------------CGGCAAAAGUUGUAAACC-UUUUUCGGCACUUAUCUGUCACACGUCACACGGCGCCAACAUCAUUUGUCAA --------------------.((((((.(.(((.....-......((((......))))...((((....))))...))).).)))))).. ( -14.10, z-score = -1.41, R) >droSec1.super_1 2732671 70 - 14215200 --------------------CGGCAAAAGUUGUAAACC-UUUUUCGGCACUUAUCUGUCACACGUCACACGGCGCCAACAUCAUUUGUCAA --------------------.((((((.(.(((.....-......((((......))))...((((....))))...))).).)))))).. ( -14.10, z-score = -1.41, R) >droYak2.chr2L 17755253 70 - 22324452 --------------------CGGCAAAAGUUGUAAACC-UUUUUCGGCACUUAUCUGUCACACGUCACACGGCUCCAACAUCAUUUGUCAA --------------------.((((((.(.(((.....-......((((......))))....(((....)))....))).).)))))).. ( -12.30, z-score = -1.39, R) >droEre2.scaffold_4929 9084256 70 + 26641161 --------------------CGGCAAAAGUUGUAAACC-UUUUUCGGCACUUAUCUGUCACACGUCACACGGCGCCAACAUCAUUUGUCAA --------------------.((((((.(.(((.....-......((((......))))...((((....))))...))).).)))))).. ( -14.10, z-score = -1.41, R) >droAna3.scaffold_13266 11409406 73 + 19884421 -----------------AUUCAAGAAAAGUUGUAAACC-UUUUUCGGCACUUAUCUGUCACACGUCACACGGCGCCAGCAUCAUUUGUCAA -----------------...........((((......-......((((......))))...((((....)))).))))............ ( -9.50, z-score = 0.39, R) >droPer1.super_4 4489369 70 - 7162766 --------------------CGACAAAAGUUGUAAACC-UUUUUCGGCACUUAUCUGUCACACGUCACACGGCGCCAACAUCAUUUGUCAA --------------------.((((((.(.(((.....-......((((......))))...((((....))))...))).).)))))).. ( -14.70, z-score = -1.99, R) >dp4.chr3 9165792 70 - 19779522 --------------------CGACAAAAGUUGUAAACC-UUUUUCGGCACUUAUCUGUCACACGUCACACGGCGCCAACAUCAUUUGUCAA --------------------.((((((.(.(((.....-......((((......))))...((((....))))...))).).)))))).. ( -14.70, z-score = -1.99, R) >droVir3.scaffold_12875 14370539 91 - 20611582 CAUCAAUGACAAAUGGCAUUUGGCAAAAGUUGUAAACCUUUUUUCGGCACUUAUCUGUCACACGUCACACAGCGCCAACAUCAUUUGUCAG ......((((((((((...((((((((((........)))))...((((......))))..............)))))..)))))))))). ( -22.30, z-score = -2.85, R) >droGri2.scaffold_15245 14353916 90 - 18325388 CAUCAAUAAUAAAUGGCAUUUGGCAAAAGUUGUAAACC-UUUUUCGGCACUUAUCUGUCACACGUCACACAGCGCCAACAUCAUUUGUCAG ........((((((((...((((((((((........)-))))..((((......))))..............)))))..))))))))... ( -15.20, z-score = -1.05, R) >droMoj3.scaffold_6496 9831204 90 - 26866924 CAUCAAUAAUAAAUGGCAUUUGGCAAAAGUUGUAAACC-UUUUUCGGCACUUAUCUGUCACACGUCACACAGCGCCAACAUCAUUUGUCAG ........((((((((...((((((((((........)-))))..((((......))))..............)))))..))))))))... ( -15.20, z-score = -1.05, R) >consensus ____________________CGGCAAAAGUUGUAAACC_UUUUUCGGCACUUAUCUGUCACACGUCACACGGCGCCAACAUCAUUUGUCAA .....................((((((.(.(((............((((......))))...(((......)))...))).).)))))).. (-11.53 = -11.52 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:46 2011