| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,025,429 – 5,025,521 |
| Length | 92 |
| Max. P | 0.657092 |
| Location | 5,025,429 – 5,025,521 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 91.13 |
| Shannon entropy | 0.15071 |
| G+C content | 0.54011 |
| Mean single sequence MFE | -31.92 |
| Consensus MFE | -26.78 |
| Energy contribution | -26.66 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657092 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5025429 92 + 21146708 -UUUCCCGUGAGUUCAAAACAAAGAAGUUAUCGGGCGACAGCACACAGUGUGCCGCCCUGGUCUUAGCAGCUGUGACCGUUAUCGGAGCUGCC -....((((((.(((........))).)))).(((((...((((.....))))))))).)).....((((((.(((......))).)))))). ( -32.10, z-score = -2.10, R) >droEre2.scaffold_4929 9016813 92 - 26641161 -UUUUCCGGGGGUUCAAAACAAAGAAGUUAUCGGGCGAUAGCACACACUGUACCGCCCUGGUCGCAGCAGCUGUGGCUGUUAUCGGAGCUGCC -......((.(((((...........((.((((((((((((......))))..))))).))).))((((((....))))))....))))).)) ( -30.20, z-score = -0.54, R) >droYak2.chr2L 17687086 93 + 22324452 UUUUCCUGGGGGUUCAAAACAAAGAAGUUAUCGGGCGAUAGCACACUGUGUGUCGCCCUGGUCGCAGCAGCUGUGGCCGUUAUCGGAACUGCC .......((.(((((..(((............((((((((.(((...))))))))))).((((((((...)))))))))))....))))).)) ( -36.90, z-score = -2.54, R) >droSec1.super_1 2664731 92 + 14215200 -UUUUCCGUGAGUUCAAAACAAAGAAGUUAUCGGGCGAUAGCACGCAGUGUGCCGCCCUGGUCUUAGCAGCUGUGACCGUUAUCGGAGCUGCC -....((((((.(((........))).)))).(((((...((((.....))))))))).)).....((((((.(((......))).)))))). ( -31.20, z-score = -1.74, R) >droSim1.chr2R 3694388 92 + 19596830 -UUUUCCGUGAGUUCAAAACAAAGAAGUUAUCGGGCGAUAGUACGCAGUGUGCCGCCCUGGUCUUAGCAGCUGUGACCGUUAUCGGAGCUGCC -....((((((.(((........))).)))).(((((...((((.....))))))))).)).....((((((.(((......))).)))))). ( -29.20, z-score = -1.43, R) >consensus _UUUUCCGUGAGUUCAAAACAAAGAAGUUAUCGGGCGAUAGCACACAGUGUGCCGCCCUGGUCUUAGCAGCUGUGACCGUUAUCGGAGCUGCC .....((((((.(((........))).)))).(((((...((((.....))))))))).)).....((((((.(((......))).)))))). (-26.78 = -26.66 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:40 2011