| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,403,882 – 2,403,981 |
| Length | 99 |
| Max. P | 0.756457 |
| Location | 2,403,882 – 2,403,981 |
|---|---|
| Length | 99 |
| Sequences | 9 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 65.64 |
| Shannon entropy | 0.63910 |
| G+C content | 0.53408 |
| Mean single sequence MFE | -30.80 |
| Consensus MFE | -11.23 |
| Energy contribution | -11.73 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.756457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2403882 99 + 23011544 ----CCUUAAAGUCGGUCAAGGCGCAAGUUG---CUCGAAGGACGCA----AGUCGUUCCCUCAGCUCCUUUUUUU--CGCUCUUAUUCAGGAGGUCCUGCGUGACCAGACG ----.......(((((((...((((((((((---...(((.(((...----.))).)))...))))).........--..(((((....)))))....))))))))).))). ( -32.60, z-score = -1.88, R) >droSim1.chr2L 2362956 98 + 22036055 ----CCUUAAAGUCGGUCAAGGCGCAAGUUG---CUCGAAGGACGCA----AGUCGUUCCCUCAGCUCCUUUUUUU---GCUCUUAUUCAGGAGGUCCUGCGUGACCAGACG ----.......(((((((...((((((((((---...(((.(((...----.))).)))...))))).........---.(((((....)))))....))))))))).))). ( -32.60, z-score = -1.88, R) >droSec1.super_5 577197 98 + 5866729 ----CCUUAAAGUCGGUCAAGGCGCAAGUUG---CUCGAAGGACGCA----AGUCGUUCCCUCAGCUCCUUUUUUU---GCUCUUAUUCAGGAGGUCCUGCGUGACCAGACG ----.......(((((((...((((((((((---...(((.(((...----.))).)))...))))).........---.(((((....)))))....))))))))).))). ( -32.60, z-score = -1.88, R) >droYak2.chr2L 2389854 105 + 22324452 ----CCUUAAAGUCGGUCAAGGCGCAAGUUG---CUCGAAGGACGUACAUAAGUCGUUCCCUCAGCUCCUUUUUUUUGCGCUCUUAUUCAGGAGGUCCUGCGUGACCAGACG ----.......(((((((((((((((((..(---((.((.(((((.((....)))).))).)))))........))))))).)))((.((((....)))).)))))).))). ( -34.10, z-score = -2.23, R) >droEre2.scaffold_4929 2445766 85 + 26641161 ----CCUUAAAGUCGGUCAAGGCGCAAGUUG---UGCGAAGGACGCA-----------------GCUCCUUUUUUU---GCUCUUAUUCAGGAGGUCCUGCGUGACCAGACG ----.......(((((((...((((.....)---))).....(((((-----------------(..((((((...---..........))))))..)))))))))).))). ( -29.02, z-score = -1.57, R) >droAna3.scaffold_12916 9569062 85 + 16180835 ----CCUUAAAGUCGGUCAAGGCAGAAGACAAUUUUUUUUGGAAUUU--------------UU----UCUCUGCUC-----UUGAUCCUGCGGGGUCCUGCGUGACCAGACA ----.......((((((((((((((((((.((((((....)))))).--------------))----).))))).)-----))))))..((((....)))).......))). ( -27.90, z-score = -2.21, R) >dp4.chr4_group4 1664665 90 + 6586962 GCGUCCUUAAAGUCGGUCAACGCACAAGACG---UCGGAAGGACUUC--------------UCGGCCUCUCUGUGG-----GGCGGGCUUCCCGGUCCUCCGUGACCAGACG ...........((((((((((((....).))---)((((.(((((..--------------...(((((.....))-----)))(((...))))))))))))))))).))). ( -34.70, z-score = -0.80, R) >droPer1.super_10 668379 90 + 3432795 GCUUCCUUAAAGUCGGUCAACGCACAAGACA---UCGGAAGGACUUC--------------UCGGCCUCUCUGUGG-----GGCGGGCUUCCCGGUCCUGCGUGACCAGACG ...........((((((((.((((...(((.---..(((((.....(--------------(((.((((.....))-----)))))))))))..))).))))))))).))). ( -35.00, z-score = -1.55, R) >droWil1.scaffold_180703 2909328 95 + 3946847 CCGGCAUUAAAGUCGGUCAAGGCAGAAGGCGAACUUCAACAACUACA----------UAACUAGACUUCAUCUCCU-------UUAUCCUGAAAAUCCUGCGUGACCAGACG ...........((((((((..(((((((.....)))).....(((..----------....)))............-------...............))).))))).))). ( -18.70, z-score = -0.61, R) >consensus ____CCUUAAAGUCGGUCAAGGCGCAAGUUG___UUCGAAGGACGCA__________U__CUCAGCUCCUUUUUUU___GCUCUUAUUCAGGAGGUCCUGCGUGACCAGACG ...........((((((((...(....)...........(((((..................................................)))))...))))).))). (-11.23 = -11.73 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:08 2011