| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,993,529 – 4,993,628 |
| Length | 99 |
| Max. P | 0.993564 |
| Location | 4,993,529 – 4,993,628 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 69.15 |
| Shannon entropy | 0.56610 |
| G+C content | 0.39948 |
| Mean single sequence MFE | -26.59 |
| Consensus MFE | -9.96 |
| Energy contribution | -9.09 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.69 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.62 |
| SVM RNA-class probability | 0.993564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4993529 99 + 21146708 UAGUAAAUAUGU----UUAGUGUAAAGUUGGGCUUACUCUUCGCGGAAUAUCUAAAA-UUUUACCCGAUAUCUGUGAGGCGUGAGCCCGAUCGCUAGCCUUAAG ............----((((((....(((((((((((.(((((((((.((((.....-........))))))))))))).)))))))))))))))))....... ( -36.32, z-score = -5.00, R) >droSec1.super_1 2631822 99 + 14215200 UAGGAAACAUGU----UUAGUGUAAAGUUGGACUUACUCGUCGCGGAAUAUCUAAAG-UUUUACGCGAUAUCUGUGACGCGUAAGCCCGAUCGCUAGCCUUAAG ..(....)....----((((((....(((((.(((((.(((((((((.((((.....-........))))))))))))).))))).)))))))))))....... ( -32.72, z-score = -3.16, R) >droEre2.scaffold_4929 8985210 99 - 26641161 UAGGAAAUAUGU----UUAGUGUAAAGUUGGGCUUACUCGUCUCGAAAUAUCUUAAA-UUGUAAUCGAUAUUUGGGACGCGUAAGUCUUAUCGCUAGCCUUAAG ............----((((((.......((((((((.((((((.(((((((.....-........))))))))))))).))))))))...))))))....... ( -28.12, z-score = -3.22, R) >dp4.chr3 9705692 86 + 19779522 UAGGAAAUAUGUAUAUCUAGCGUAAA-UUGGGUUUGCACGUCUCAAA-----UCGAA-----------UAUCUGUUGCGUUCAAACCC-AUCCGUAGCCUUAAG ..(((..(((((.......)))))..-.((((((((.((((..((..-----.....-----------....))..)))).)))))))-))))........... ( -21.70, z-score = -2.94, R) >droPer1.super_4 5030402 86 + 7162766 UAGGAAAUAUGUAUAUCUAGUGUAAA-UUGGGUUUGCACGUCUCAAA-----UCGAA-----------UAUCUGUUACGUUCAAACCC-AUCCGUAGCCUUAAG .(((...(((((((((...)))))..-.((((((((.((((..((..-----.....-----------....))..)))).)))))))-)..)))).))).... ( -19.80, z-score = -2.69, R) >droAna3.scaffold_13266 16380161 82 - 19884421 UAGGAAAUAU------UUAGUGUAAAGUUGUGCUUACUCGUGGCGA------UGGAU---------UGUCGCAGAAGCCUGUAAGCCA-ACGGAUAGCUUUAAG ..........------..(((.....((((.((((((..((.((((------(....---------.)))))....))..))))))))-)).....)))..... ( -22.80, z-score = -1.77, R) >droYak2.chr2L 17655544 100 + 22324452 UAGAAAAUAUGU----UUAGUGUCAAGUUGGGCUUGCUCGUCUCGGAAUAUCUAAAAAUUUUACCCGAUAUUUGUGACGCUCAAGCCUUAUCGCUAGCCUUAAG ............----((((((.......(((((((..((((.((.((((((..............)))))))).))))..)))))))...))))))....... ( -24.64, z-score = -2.11, R) >consensus UAGGAAAUAUGU____UUAGUGUAAAGUUGGGCUUACUCGUCUCGAAAUAUCUAAAA_UU_UA__CGAUAUCUGUGACGCGUAAGCCC_AUCGCUAGCCUUAAG ...................((........(((((((..(((..((((.......................))))..)))..)))))))........))...... ( -9.96 = -9.09 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:40 2011