| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,982,877 – 4,982,992 |
| Length | 115 |
| Max. P | 0.545622 |
| Location | 4,982,877 – 4,982,992 |
|---|---|
| Length | 115 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 68.13 |
| Shannon entropy | 0.69430 |
| G+C content | 0.39430 |
| Mean single sequence MFE | -27.04 |
| Consensus MFE | -11.80 |
| Energy contribution | -11.00 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.58 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4982877 115 + 21146708 GUGCAGCGAUUAUAACUGCAAAUCGA--GUUCUACUGGCUUGUUUGCAGAACUCAAUGUUGCAAGAUUAAUUUGUGAUGCGCAGGGAAAU-GCACUUCACC-GAUUGCAAUUCAAAUUG .(((((((.......(((((((.(((--(((.....))))))))))))).......)))))))....(((((((...((((..(((((..-....))).))-...))))...))))))) ( -31.94, z-score = -1.28, R) >droEre2.scaffold_4929 8974505 115 - 26641161 AUGCAGCGAAUAUAACUGUGAAUCGA--GUUCUACUGGCUUGUUUGCAGAACUCAAUGUUGCGAGAUUAAUUUGUGAUUCGCAGGGAAAU-GCACUUCACC-GAUUGCACUUCAAAUUG .(((((((.......(((((((((((--(((((....((......)))))))))......(((((.....)))))))))))))).(((..-....)))..)-).))))).......... ( -30.70, z-score = -1.32, R) >droYak2.chr2L 17644928 115 + 22324452 AUGCAGCGAAUAUAACUGCGAAUCGA--GUUCUAUAGGCUUGUUUGCAGAACUCAAUGUUGCAAGAUUAAUUUGUGAUGCGCAGGGAAAU-GCACUUCACC-GAUUGCAACUGAAGUUG .(((((((.......(((((((.(((--(((.....))))))))))))).......)))))))....(((((.((((.(.(((......)-)).).)))).-)))))((((....)))) ( -33.24, z-score = -1.54, R) >droSec1.super_1 2621112 115 + 14215200 AUGCAGCGAAUAUAACUGCGAAUCGA--GUUCUACUGGCUUGUUUGCAGAACUCAAUGUUGCAAGAUUAAUUUGUGAUGCGCAAGGAAAU-GCACUUCACC-GAUUGCAACUCAAAUUG .(((((((.......(((((((.(((--(((.....))))))))))))).......)))))))....(((((.((((.(.(((......)-)).).)))).-)))))............ ( -30.74, z-score = -1.27, R) >droSim1.chr2R 3653496 115 + 19596830 AUGCAGCGAAUAUAACUGCGAAUCGA--GUUCUACUGGCUUGUUUGCAGAACUCAAUGUUGCAAGAUUAAUUUGUGAUGCGCAAGGAAAU-GCACUUCACC-GAUUGCAACUCAAAUUG .(((((((.......(((((((.(((--(((.....))))))))))))).......)))))))....(((((.((((.(.(((......)-)).).)))).-)))))............ ( -30.74, z-score = -1.27, R) >droAna3.scaffold_13266 16370024 113 - 19884421 UUGCAGCCAAUAUAACUGCAAUUAUA--GUAUGUCCAGCUUUUUUGCAGAACUCAAUGUUGCAAAAUCAAGUUGUGGC-CGCAAGGAAUC--UGCUGUACC-AGCUGCAGGUCAAACUG ((((.(((((((((.(((......))--)))))).(((((((((((((..((.....)))))))))..))))))))))-.)))).((.((--(((.((...-.)).)))))))...... ( -30.10, z-score = -0.60, R) >dp4.chr3 9695481 114 + 19779522 UUGCAUCGAAUAUAACUGCAAAUUG---GUUCAUUAAACUUGUUUGCGGAACUCAAUGUUGCAAGAUUAAGUUGUG-UGUGCAGAAAAAUCGUACUAGUCG-GAUUGUAAUGCAUUUUG (((((((((((((((((((((((.(---(((.....)))).))))))(.(((.....))).).......)))))))-)((((.((....))))))...)))-)..)))))......... ( -25.00, z-score = -0.38, R) >droPer1.super_4 5020184 114 + 7162766 UUGCAUCGAAUAUAACUGCAAAUUG---GUUCAUUAAACUUGUUUGCGGAACUCAAUGUUGCAAGAUUAAGUUGUG-UGUGCAGGAAAAUCGUACUAGUCG-GAUUGCAAUGCAUUUUG (((((((((((((((((((((((.(---(((.....)))).))))))(.(((.....))).).......)))))))-)((((.........))))...)))-)..)))))......... ( -26.40, z-score = -0.34, R) >droWil1.scaffold_181141 3772563 100 + 5303230 GGGCAGCGAAUAUAACUGCGAUUAAAGCGUUUGUGAAGCUACUUUGCAGAACUCAAUGUUGCCAAAUAAAACAGUCAAGUAGAGAGCCAAUGUGCCAAAC------------------- .((((.....(((((.(((.......))).)))))..(((.((((((...(((...((((....))))....)))...))))))))).....))))....------------------- ( -19.90, z-score = 0.37, R) >droVir3.scaffold_12875 20243699 114 - 20611582 UUGCAGCAAAUAUAACUGUGCUAAGU--GUAUUACAAGCCUUUUUACAGAACUCGAAGCUGCAAAAUCAAAUAAGA--GUUCUAGACUUUGCUCCUUAGCC-GGCAAUAAUUUAAAUUG (((((((........(((((..(((.--((.......)))))..)))))........)))))))...........(--(((.((((..(((((........-)))))...)))))))). ( -20.49, z-score = 0.16, R) >droGri2.scaffold_15245 10600113 109 + 18325388 UUGCAGCGAAUAUAACUGUGUCAAGU--GUACAACAAGCCUUUCUACAGAACUCAAUGCUGCAAGAUCAAACUUGA--GUGCAGGACAGCAGUCCCUAUCCCGGCUAUUAUUA------ ((((((((.......(((((..(((.--((.......)))))..))))).......))))))))..........((--.(((......))).))...................------ ( -21.84, z-score = 0.48, R) >droMoj3.scaffold_6496 5123891 114 + 26866924 UUGCAGCAAUUAUAACUGUGAUAAGU--GUGUAACAAGCCUUUUUACAGAACUCAAAGCUGCAAAAGCAAAUUUGA--GUACAGGAAAAUUACCCCAAGUC-AGCUAUAAAUAAAAUUG (((((((........((((((.(((.--((.......))))).))))))........))))))).(((..(((((.--(((.........)))..))))).-.)))............. ( -23.39, z-score = -1.62, R) >consensus UUGCAGCGAAUAUAACUGCGAAUAGA__GUUCUACAAGCUUGUUUGCAGAACUCAAUGUUGCAAGAUUAAUUUGUGAUGCGCAGGGAAAU_GCACUUCACC_GAUUGCAAUUCAAAUUG .((((((........((((((......................))))))........))))))........................................................ (-11.80 = -11.00 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:36 2011