| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,965,896 – 4,966,013 |
| Length | 117 |
| Max. P | 0.835379 |
| Location | 4,965,896 – 4,966,013 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.64 |
| Shannon entropy | 0.30179 |
| G+C content | 0.34181 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -13.90 |
| Energy contribution | -15.70 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4965896 117 + 21146708 AUUUCACUGUGUAGUUAAACCAAAUUAACACCUUACCAAUCGGUAUCACACAGUAUUAGCUGGGUACUCAAGUACCCAUUGAUUGCUAUGAUGAAAUAAAAAGCCUCAUUAAAUAUU ((((((((((((.(((((......)))))....((((....))))..)))))))..(((((((((((....)))))))......))))....))))).................... ( -29.70, z-score = -3.94, R) >droEre2.scaffold_4929 8957178 103 - 26641161 AUUUCAUUCUGUAGUUAAACCAAAUUAACACCUUACCAA----------GCAUUGUUAGCUGGGUGCUCAAGUACCCAUUG----AUAUGAAGAAAUAAAAAACCCAAUUUAAUAUU (((((.(((....(((((......)))))..........----------....((((((.(((((((....))))))))))----))).)))))))).................... ( -19.50, z-score = -2.19, R) >droSec1.super_1 2604029 113 + 14215200 AUUUCGCUGUGUAGUUAAACCAAAUUAACACCUUACCAAUCUGUACCACGCGGUAUUAGCUGAGUACUAGAAUACCCAUUG----CUAUGAAGUUAUAAAAAGCCUCAUUAAAUAUU .....((.(((..(((((......)))))..........(((((((((.((.......)))).)))).))).....))).)----).((((.(((......))).))))........ ( -16.90, z-score = -0.27, R) >droSim1.chr2R 3636015 113 + 19596830 AUUUCGCUGUGUAGUUAAACCAAAUUAACACCUUACCAAUCGGUACCACGCGGUAUUAGCUGGGUACUAGAGUACCCAUUG----CUAUGAAGUUAUAAAAAGCCUCAUUAAAUAUU ((((((((((((.(((((......)))))....((((....))))..)))))))..(((((((((((....)))))))..)----))).)))))....................... ( -29.80, z-score = -2.90, R) >droYak2.chr2L 17626956 112 + 22324452 AUUUCAUUAUGCCGUUAAACCAAAUUAACACCUUACUAAUCGGUACCACGAGGUGUUAUCUGGGUACUUGAGUACCCAUUG----CGGUGAAGAAAUAAAAAAC-UCAUUUAAUAUU (((((.((.((((((..........((((((((((((....))).....)))))))))..(((((((....)))))))..)----)))))))))))).......-............ ( -28.20, z-score = -2.89, R) >consensus AUUUCACUGUGUAGUUAAACCAAAUUAACACCUUACCAAUCGGUACCACGCGGUAUUAGCUGGGUACUAGAGUACCCAUUG____CUAUGAAGAAAUAAAAAGCCUCAUUAAAUAUU .(((((((((((.(((((......)))))....((((....))))..)))))))......(((((((....)))))))...........))))........................ (-13.90 = -15.70 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:35 2011