| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,947,372 – 4,947,467 |
| Length | 95 |
| Max. P | 0.606801 |
| Location | 4,947,372 – 4,947,467 |
|---|---|
| Length | 95 |
| Sequences | 9 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 90.59 |
| Shannon entropy | 0.19089 |
| G+C content | 0.44912 |
| Mean single sequence MFE | -29.32 |
| Consensus MFE | -19.62 |
| Energy contribution | -20.09 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4947372 95 + 21146708 UCGAUGCGAUUCGGUUGCUUCGACGCUUUCGAUGAGACUG---CAGCAAUGAAAAU-AUAUUGCGAAACUCUCAACAAGGAUACCGUUAGCGUUGUCCU ((((.(((..((((.....)))))))..))))(((((...---..((((((.....-.)))))).....)))))...((((((.((....)).)))))) ( -27.90, z-score = -1.74, R) >dp4.chr3 9660280 95 + 19779522 UCGAUGCGAUUAGGUUGGUUCGACGCUUUCGUUGAGACUG---CUGCAAUACAAAU-AUAUUGCGAAACUCUCAACAAGGAUAACGUUGGCGUUGUCCU ((((..((((...))))..)))).......(((((((.(.---.(((((((.....-.)))))))..).))))))).(((((((((....))))))))) ( -31.20, z-score = -2.92, R) >droPer1.super_4 4985171 95 + 7162766 UCGAUGCGAUUAGGUUGGUUCGACGCUUUCGUUGAGACUG---CUGCAAUACAAAU-AUAUUGCGAAACUCUCAACAAGGAUAACGUUGGCGUUGUCCU ((((..((((...))))..)))).......(((((((.(.---.(((((((.....-.)))))))..).))))))).(((((((((....))))))))) ( -31.20, z-score = -2.92, R) >droAna3.scaffold_13266 16336722 95 - 19884421 UCGAUGCGAUUCGGUUGCUUCGACGCUUUCGUUGAGACUG---CUGCAAUAAAAAU-AUAUUGCGAAACUCUCAACAAGGAUAGCGUUGGCGUUGUCCU ((((.(((((...))))).)))).......(((((((.(.---.(((((((.....-.)))))))..).))))))).(((((((((....))))))))) ( -35.40, z-score = -3.92, R) >droEre2.scaffold_4929 8939183 95 - 26641161 UCGAUGCGAUUCGGUUGCUUCGACGCUUUCGAUGAGACUG---CAGCAAUGAAAAU-AUAUUGCGAAACUCUCAACAAGGAUACUGUAAGCGUUGUCCU ((((.(((..((((.....)))))))..))))(((((...---..((((((.....-.)))))).....)))))...((((((.((....)).)))))) ( -26.30, z-score = -1.39, R) >droYak2.chr2L 17608512 95 + 22324452 UCGAUGCGAUUCGGUUGCUUCGACGCUUUCGAUGAGACUG---CAGCAAUGAAAAU-AUAUUGCGAAACUCUCAACAAGGAUACUGUUAGCGUUGUCCU ((((.(((..((((.....)))))))..))))(((((...---..((((((.....-.)))))).....)))))...((((((.((....)).)))))) ( -26.30, z-score = -1.31, R) >droSec1.super_1 2585933 95 + 14215200 UCGAUGCGAUUCGGUUGCUUCGACGCUUUCGAUGAGACUG---CAGCAAUGAAAAU-AUAUUGCGAAACUCUCAACAAGGAUACCGUUAGCGUUGUCCU ((((.(((..((((.....)))))))..))))(((((...---..((((((.....-.)))))).....)))))...((((((.((....)).)))))) ( -27.90, z-score = -1.74, R) >droSim1.chr2R 3617532 95 + 19596830 UCGAUGCGAUUCGGUUGCUUCGACGCUUUCGAUGAGACUG---CAGCAAUGAAAAU-AUAUUGCGAAACUCUCAACAAGGAUACCGUUAGCGUUGUCCU ((((.(((..((((.....)))))))..))))(((((...---..((((((.....-.)))))).....)))))...((((((.((....)).)))))) ( -27.90, z-score = -1.74, R) >droWil1.scaffold_181009 2333557 95 + 3585778 UUGGUG----UUGCCUGCGACUAAGCGUCCGUUGUGACUGGCGCUGCAAUAAAAAUUAUAUUGCGAAACUCUCAACAAGGAUAACGUUGGCGUUGUCCU ....((----(((..........((((((.((....)).))))))((((((.......))))))........)))))(((((((((....))))))))) ( -29.80, z-score = -2.30, R) >consensus UCGAUGCGAUUCGGUUGCUUCGACGCUUUCGAUGAGACUG___CAGCAAUGAAAAU_AUAUUGCGAAACUCUCAACAAGGAUACCGUUAGCGUUGUCCU ((((.((((.....)))).)))).......(.(((((........((((((.......)))))).....))))).).((((((.((....)).)))))) (-19.62 = -20.09 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:32 2011