| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,946,428 – 4,946,533 |
| Length | 105 |
| Max. P | 0.556505 |
| Location | 4,946,428 – 4,946,533 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 60.78 |
| Shannon entropy | 0.66381 |
| G+C content | 0.41925 |
| Mean single sequence MFE | -23.64 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.46 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.59 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556505 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4946428 105 + 21146708 CAAUGACAAAUAAAAGGAUUUUU-GUAAUUUUUUUCAAGAGUA-UGAGAAACCUGGUGAAAGUGGAAGUUGUUCCGAAUGGAACAACUGGGCACCGCUGAGAACCCC------------ ..............(((.((((.-.((.((((....)))).))-..)))).)))(((...(((((.(((((((((....))))))))).....)))))....)))..------------ ( -28.70, z-score = -2.52, R) >droEre2.scaffold_4929 8938274 89 - 26641161 -----------CAAUGGAUUUUU-GUAAUUUUUU---AGACUA-UAAGAAGCCUGGUGACAGUGG--UUUCUUCAGAAUGGAAGUACUGGGACCCGCUGAGAACCCC------------ -----------....((.(((((-......((((---(.....-)))))(((..(((..(((((.--((((........)))).)))))..))).)))))))).)).------------ ( -20.70, z-score = -0.43, R) >droSec1.super_1 2584981 105 + 14215200 CAAUGACAUAGGAGAGAAUUUUCAGUAAUUUUUUCAAACUAUGCUAUGGAACCUGGUGAAAGUGG--AUUGUUCCGAAUGGAACUACUGGGCACCGCUGAGAACCCC------------ ..(((.((((((((((((((......)))))))))...))))).))).......((((..((((.--...(((((....)))))))))...))))............------------ ( -23.40, z-score = -0.35, R) >droSim1.chr2R 3616584 105 + 19596830 CAAUGACAUAGGAUAGAAUUUUCAGUAAUUUUUUCAAACUAUGCUAUGAAACCUGGUGAAAGUGG--AUUGUUCCGAAUGGAACUACUGGGCACCGCUGAGAACCCC------------ ..................((((((((.....(((((..........)))))...((((..((((.--...(((((....)))))))))...))))))))))))....------------ ( -22.40, z-score = -0.55, R) >droGri2.scaffold_15245 10954861 109 + 18325388 ---CAAAGAAACGGGGAAGUCGGUCUGAUUUUCUC--GGUAAAUUAAGUAAUUUUACGAAAUU-----UUGUGGUGAAAGGAAUCGACGGCAAGUGGCGAGGGAGUGUUGCGUGAUAGA ---........((((((((((.....)))))))))--)...............((((......-----((((.((((......)).)).))))(..(((......)))..))))).... ( -23.00, z-score = -0.41, R) >consensus CAAUGACAAAGCAAAGAAUUUUC_GUAAUUUUUUC_AAGUAUA_UAAGAAACCUGGUGAAAGUGG__AUUGUUCCGAAUGGAACUACUGGGCACCGCUGAGAACCCC____________ ...........(((((((((......)))))))))...................(((...(((((.....(((((....))))).........)))))....))).............. (-10.30 = -10.46 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:31 2011