| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,398,204 – 2,398,297 |
| Length | 93 |
| Max. P | 0.976938 |
| Location | 2,398,204 – 2,398,297 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 80.70 |
| Shannon entropy | 0.32622 |
| G+C content | 0.45763 |
| Mean single sequence MFE | -25.03 |
| Consensus MFE | -17.84 |
| Energy contribution | -18.45 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2398204 93 + 23011544 -------------------AAAAAAGUACACAGAGAUGACAAAGCUGCAAAAGUUAUUUUGUAAUUAGUGCAAGCGGCAAGGACGACGGGAGACCGCCGCGUGG---AUAAGGAC- -------------------.........(((..............((((..((((((...))))))..)))).(((((..(.....)((....)))))))))).---........- ( -25.00, z-score = -2.84, R) >droEre2.scaffold_4929 2440092 93 + 26641161 -------------------AAAAAAGUACACGGAGAUGACAAAGCUGCAAAAGUUAUUUUGUAAUUAGUGCAGGCGGCAAGGACAACGGGAGACCGCCGCGUGG---AUAAGGAC- -------------------.........(((.............(((((..((((((...))))))..)))))(((((..(.....)((....)))))))))).---........- ( -28.00, z-score = -3.65, R) >droYak2.chr2L 2383003 95 + 22324452 -----------------AAAAAAAAGUACACAGAGUCGACAAAGCUGCAAAAGUUAUUUUGUAAUUAGUGCAAGCGGCAAGGACAACGGGAGACCGCCGCGUGG---GUAAGGAC- -----------------...........(((..............((((..((((((...))))))..)))).(((((..(.....)((....)))))))))).---........- ( -25.00, z-score = -2.02, R) >droSec1.super_5 571554 93 + 5866729 -------------------AAAAAAGUACACAGAGAUGACAAAGCUGCAAAAGUUAUUUUGUAAUUAGUGCAAGCGGCAAGGACGACGGGAGACCGCCGCGUGG---AUAAGGAC- -------------------.........(((..............((((..((((((...))))))..)))).(((((..(.....)((....)))))))))).---........- ( -25.00, z-score = -2.84, R) >droSim1.chr2L 2357278 93 + 22036055 -------------------AAAAAAGUACACAGAGAUGACAAAGCUGCAAAAGUUAUUUUGUAAUUAGUGCAAGCGGCAAGGACGACGGGAGACCGCCGCGUGG---AUAAGGAC- -------------------.........(((..............((((..((((((...))))))..)))).(((((..(.....)((....)))))))))).---........- ( -25.00, z-score = -2.84, R) >droAna3.scaffold_12916 9562470 116 + 16180835 AACAAAAAUACACAAAGAUGACACGGCGCUAGGAAAGCAAAAAGCUGCAAAAGUUAUUUUGUAAUUAGUGCAAAAGGCAGCGACAUCACCAGUCGACGGUUUGGGGGAAAAGGACA ................((((.......(((.....))).....(((((........(((((((.....))))))).)))))..)))).((((........))))............ ( -22.20, z-score = -0.33, R) >consensus ___________________AAAAAAGUACACAGAGAUGACAAAGCUGCAAAAGUUAUUUUGUAAUUAGUGCAAGCGGCAAGGACAACGGGAGACCGCCGCGUGG___AUAAGGAC_ ............................(((..............((((..((((((...))))))..)))).(((((..(.....)((....))))))))))............. (-17.84 = -18.45 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:08 2011