| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,938,822 – 4,938,931 |
| Length | 109 |
| Max. P | 0.517597 |
| Location | 4,938,822 – 4,938,931 |
|---|---|
| Length | 109 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 71.55 |
| Shannon entropy | 0.56241 |
| G+C content | 0.46854 |
| Mean single sequence MFE | -24.40 |
| Consensus MFE | -11.34 |
| Energy contribution | -11.40 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4938822 109 + 21146708 ACCUACUCCCCCGACAGUCAAUGUUGCGUAUACGCAAUAUUCAGGUAGAGGCAAAGACAAAGGCAGCUCGUAUCCGUAUCGUAAAUUGCGGUUUCGCCAAAACCCUUUU- .....(((..(((.....)(((((((((....)))))))))..))..)))........(((((.....((...(((((........)))))...)).......))))).- ( -24.70, z-score = -0.98, R) >droSim1.chr2R 3608953 107 + 19596830 ACCUACUCCC--GACGGCCAAUGUUGCGUAUACGCAAUAUUCAGGUAGAGCCAAAGACAAAGGCAGCUCGUAUCCGUAUCGUAAAUUGCGGUUCUGCCAAAACCCUUUU- ..........--...((..(((((((((....)))))))))..(((((((((.........))).........(((((........))))).)))))).....))....- ( -28.50, z-score = -1.88, R) >droSec1.super_1 2577458 108 + 14215200 ACCUACUCCC--GACAGCCAAUGUUGCGUAUACGUAAUAUACAGGUAGAGCCAAAGACAAAGGCAGCUCGUAUCCGUAUCGUAAAUUGCGGUUCUGCCAAAAACCCUUUU ..........--........((((((((....))))))))...(((((((((.........))).........(((((........))))).))))))............ ( -25.30, z-score = -1.49, R) >droYak2.chr2L 17600374 104 + 22324452 ---AACUCCC--GACGGAAAAUGUUGCGUAUACGCAAUAUUCAGGUGGAGGCAAAGACAAAGGCAGCUCGUAUCCGUAUCGUAAAUUGCGGUUCUGUCAAAACGAUUCU- ---..((((.--..(....(((((((((....)))))))))..)..))))...........(((((.......(((((........)))))..)))))...........- ( -25.90, z-score = -0.66, R) >droEre2.scaffold_4929 8930694 104 - 26641161 ---AGCUCCU--GGCAGCCAAUGGUGCGUAUACGCAAUACUCAGGUAGAGGCAAAGACAAAGGCAGCUCGUAUCCGUAUCGCAAAUUGCGGUUCUGUCAAAACGAUUCU- ---......(--(((((((...((((((.(((((.....(((.....)))((..........))....))))).))))))((.....))))..))))))..........- ( -24.70, z-score = 0.59, R) >dp4.chr3 9653010 88 + 19779522 --------CC--ACCAGUCAGCGUUGCGUAUACGCAACAUCCUUGC-----CAAAGGUAA-----GCUCGUAUCCGUAUCGUAAAUUGCGGUUGUGCCAGAAUCACUU-- --------..--..........((((((....))))))...(((((-----(...)))))-----)((.(((((((((........)))))..)))).))........-- ( -22.70, z-score = -1.73, R) >droPer1.super_4 4977793 93 + 7162766 ----CCAUCC--ACCAGCCAUCGUUGCGUAUACGCAACAUCCUUGC-----CAAAGGUAA-----GCUCGUAUCCGUAUCCUAAAUUGCGGUUGUGCCAGAAUCACUUU- ----......--..........((((((....))))))...(((((-----(...)))))-----)((.(((((((((........)))))..)))).)).........- ( -22.70, z-score = -2.48, R) >droVir3.scaffold_12875 3816 85 - 20611582 -------------ACAGAGAACUCUGCGUAUACGCAAUUUUGCAGGUGAGUUACAUAUA---------CGCAACCUUAUCGUAAAUUGUGG--CUGCCAGCACCAGUUA- -------------......((((.((((....))))....(((.(((.(((((((..((---------((.........))))...)))))--))))).)))..)))).- ( -20.70, z-score = -0.61, R) >consensus ____ACUCCC__GACAGCCAAUGUUGCGUAUACGCAAUAUUCAGGUAGAGGCAAAGACAAAGGCAGCUCGUAUCCGUAUCGUAAAUUGCGGUUCUGCCAAAACCAUUUU_ ......................((((((....))))))...............................(((.(((((........)))))...)))............. (-11.34 = -11.40 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:30 2011