| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,935,597 – 4,935,670 |
| Length | 73 |
| Max. P | 0.610584 |
| Location | 4,935,597 – 4,935,670 |
|---|---|
| Length | 73 |
| Sequences | 9 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 73.15 |
| Shannon entropy | 0.55862 |
| G+C content | 0.37033 |
| Mean single sequence MFE | -14.39 |
| Consensus MFE | -7.50 |
| Energy contribution | -8.34 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.610584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4935597 73 - 21146708 GACACAAAUUGCAUUUAAUUGCAGUGACAGGCAAUUUGUGGAUGUUUCCUGUCU----GCUGUUUUCGGCAUUUACU .......((((((......))))))((((((.(((........))).))))))(----((((....)))))...... ( -20.60, z-score = -2.02, R) >droSim1.chr2R 3605697 73 - 19596830 GACACAAAUUGCAUUUAAUUGCACUGACAGGCAAUUUGCGGAUGUUUCCUGUCU----GCUGUUUUCGGCAUUUACU ((((((((((((..(((.......)))...)))))))).(((....)))))))(----((((....)))))...... ( -18.50, z-score = -1.73, R) >droSec1.super_1 2574177 73 - 14215200 GACACAAAUUGCAUUUAAUUGCACUGACAGGCAAUUUGCGGAUGUUUCCUGUCU----GCUGUUUUCGGCAUUUACU ((((((((((((..(((.......)))...)))))))).(((....)))))))(----((((....)))))...... ( -18.50, z-score = -1.73, R) >droYak2.chr2L 17596655 77 - 22324452 GACACAAAUUGCAUUUAAUUGCACUGACAGGCAAUUUGCGGAUGUUUCCUGUCUUCUGUCUGUUUUUGGCAUUUACC ...............(((.(((...((((((((....(((((....))).))....))))))))....))).))).. ( -17.50, z-score = -1.29, R) >droEre2.scaffold_4929 8927047 73 + 26641161 GACACAAAUUGCAUUUAAUUGCACUGACAGGCAAUUUGCGGAUGUUUCCUGUCU----GCUGUUUUUGGCAUUUACU ((((((((((((..(((.......)))...)))))))).(((....)))))))(----(((......))))...... ( -16.50, z-score = -0.88, R) >droAna3.scaffold_13266 16324291 73 + 19884421 AACACAAAUUGCAUUUAAUUGCAUUGACAGGCAAUUUGUGCGAAUUUCCUGUUG----CUUGUUUUUGGCAUUCAUU .........((((......))))..((((((.(((((....))))).))))))(----((.......)))....... ( -15.80, z-score = -0.54, R) >droPer1.super_4 4974973 72 - 7162766 GACGUAAAUUGCAUUUAAUUGCAUUGACAGGCAAUUUGUA-GAGUUUCCUUGUU----UUCCCUUUUCCCAUUUCCA (((((....((((......))))...))(((.(((((...-))))).))).)))----................... ( -7.60, z-score = 0.21, R) >dp4.chr3 9650190 72 - 19779522 GACGUAAAUUGCAUUUAAUUGCAUUGACAGGCAAUUUGUA-GAAUUUCCUUGUU----UUCCCUUUUCCCAUUUCCA (((((....((((......))))...))(((.(((((...-))))).))).)))----................... ( -7.60, z-score = 0.00, R) >droWil1.scaffold_181009 2318341 57 - 3585778 --AAAAAAGCGAUUUAAAUUGUAAUUGCUGUUACUCACUGAAUCUAUCUUGUUU----UAUGU-------------- --........((((((....(((((....)))))....))))))..........----.....-------------- ( -6.90, z-score = -1.03, R) >consensus GACACAAAUUGCAUUUAAUUGCACUGACAGGCAAUUUGUGGAUGUUUCCUGUCU____GCUGUUUUUGGCAUUUACU .........((((......))))..((((((.(((........))).))))))........................ ( -7.50 = -8.34 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:29 2011