| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,840,704 – 4,840,800 |
| Length | 96 |
| Max. P | 0.937841 |
| Location | 4,840,704 – 4,840,800 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 74.93 |
| Shannon entropy | 0.50027 |
| G+C content | 0.57908 |
| Mean single sequence MFE | -37.36 |
| Consensus MFE | -19.95 |
| Energy contribution | -22.24 |
| Covariance contribution | 2.29 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.937841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4840704 96 - 21146708 UUGUUGUCGUGGCUUCUGUUAUCAGCGGCCAGCGACGACGAUGGCGACUGAUAAG---CAUGUCCAGCUGUUCCAGCUGGAGCCCUGAGCGCCGGCGCU ((((((((((((((.(((....))).))))).)))))))))(((((.((.(...(---(...((((((((...))))))))))..).)))))))..... ( -44.70, z-score = -2.77, R) >droEre2.scaffold_4929 8831838 96 + 26641161 UUGUUGUCGUGGCUCCUGUUAUCAGCGGCCAGCGACGACGAUGGCGAUUGAUAAG---CAUGUCCAGCUGUUCCAGUUGGAGCCCUCAGCGCCGGCGCU ((((((((((((((.(((....))).))))).)))))))))(((((.((((...(---(...((((((((...))))))))))..)))))))))..... ( -44.00, z-score = -3.10, R) >droYak2.chr2L 17498763 93 - 22324452 ---UUGUCGUGGCUCCCGUUAUCAGCGGCCAGCGACGACGAUGGCGAUUGAUAAG---CCUGUCCAGCGGUUCCAGUUGGAGCUCUCAGUGCUGGCGCU ---(((((((.(((.((((.....))))..))).))))))).(((.........)---)).(((((((((((((....))))))......))))).)). ( -36.60, z-score = -0.89, R) >droSec1.super_1 2478913 88 - 14215200 UUGUUGUCGUGGCUCCUGUUAUCAGCGGCCAGCGACGACGAUGGCGACUGAUAAG---CCUGUCCAGCUGUUCCAGAUGGAGGCCUCAGCG-------- ((((((((((((((.(((....))).))))).)))))))))...((.((((...(---((..((((.(((...))).))))))).))))))-------- ( -37.00, z-score = -2.37, R) >droSim1.chr2R 3510458 96 - 19596830 UUGUUGUCGUGGCUCCUGUUAUCAGCGGCCAGCGACGACGAUGGCGACUGAUAAG---CCUGUCCAGCUGUUCCAGAUGGAGGCCUCAGCGCCGGCGCU ((((((((((((((.(((....))).))))).)))))))))(((((.((((...(---((..((((.(((...))).))))))).)))))))))..... ( -45.50, z-score = -2.92, R) >droAna3.scaffold_13266 16230119 99 + 19884421 UUGUUGUUAUGACUUCUGUUAUCAGUGGCCAGCGACGUCGAUUGCGCGAGAUAAGGCUGCUGGCCAGCUGUUCCGUUUGCUGCCUUCGCCAGCGGCGCC ........(((((....)))))((((((((((((..(((.....(....)....)))))))))))).)))........(((((........)))))... ( -32.70, z-score = 0.33, R) >droVir3.scaffold_12875 20493272 72 + 20611582 UUGUUGCCAUGGCCGCUGUUAUCAGCAAAAGGCAGCGACGAUUUCGUUAGAUAAG------CGCCAGCUGUUUCAUUU--------------------- ..((((((......((((....))))....))))))((((....)))).((..((------(....)))...))....--------------------- ( -21.00, z-score = -1.17, R) >consensus UUGUUGUCGUGGCUCCUGUUAUCAGCGGCCAGCGACGACGAUGGCGACUGAUAAG___CCUGUCCAGCUGUUCCAGUUGGAGCCCUCAGCGCCGGCGCU ((((((((((((((.(((....))).))))).))))))))).....................((((((((...)))))))).................. (-19.95 = -22.24 + 2.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:25 2011