| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,838,711 – 4,838,775 |
| Length | 64 |
| Max. P | 0.963480 |
| Location | 4,838,711 – 4,838,775 |
|---|---|
| Length | 64 |
| Sequences | 3 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 94.79 |
| Shannon entropy | 0.07174 |
| G+C content | 0.31250 |
| Mean single sequence MFE | -10.97 |
| Consensus MFE | -10.99 |
| Energy contribution | -10.77 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.77 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4838711 64 + 21146708 UUGAGCGUUAAAAAGAAGUUUCCUUACUUCAAAUUCUUGUUGCAUUUCCAACGCUUUCAGAAUU ..((((........(((((......)))))........((((......))))))))........ ( -11.10, z-score = -1.45, R) >droSim1.chr2R 3508455 64 + 19596830 UUGAGCGUUAAAACGAAGUUUCCUUACUUCAAAUUUUUAUUGCAUUUCCAACGCUUUCAGAAUU ..(((((((.....(((((......))))).(((....)))........)))))))........ ( -10.70, z-score = -2.00, R) >droSec1.super_1 2476918 64 + 14215200 UUGAGCGUUAAAACGAAGUUUCCUUACUUCAAAUUUUUAUUGCAUUAACAACGCUUUCAGAAUU ..(((((((.....(((((......)))))......(((......))).)))))))........ ( -11.10, z-score = -1.86, R) >consensus UUGAGCGUUAAAACGAAGUUUCCUUACUUCAAAUUUUUAUUGCAUUUCCAACGCUUUCAGAAUU ..(((((((.....(((((......))))).(((....)))........)))))))........ (-10.99 = -10.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:24 2011