| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,800,842 – 4,800,914 |
| Length | 72 |
| Max. P | 0.754238 |
| Location | 4,800,842 – 4,800,914 |
|---|---|
| Length | 72 |
| Sequences | 4 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 89.33 |
| Shannon entropy | 0.16327 |
| G+C content | 0.48024 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -14.24 |
| Energy contribution | -15.50 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.754238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4800842 72 - 21146708 CUCAGAGGGUGGAAGUUACGUAUCUAGUUCC------CGCAUACAUACACUCAUUCGUGUAUCCCCCAUCGGCAAUCG ....(((((.(((......(((((.......------.).)))).(((((......))))))))))).))........ ( -15.60, z-score = -0.95, R) >droSec1.super_1 2438717 72 - 14215200 CUCCGAGGGUGGAAGUUACGUACCUAGUUCC------CGCAUACAUACACUCAUUUGUGUAUCCCCCAUCGGCAAUCG ..(((((((.(((.(..((.......))..)------........(((((......))))))))))).))))...... ( -19.00, z-score = -1.81, R) >droYak2.chr2L 17458887 78 - 22324452 CUCCGAGGGUGGAAGUUACGUAUGUAGUUCCAUUACACACAUACAUACACUCAUUUGUGUAUCCCCCAUCGUCAAUCG ...((((((.(((......((((((.((........)))))))).(((((......))))))))))).)))....... ( -22.50, z-score = -3.25, R) >droEre2.scaffold_4929 8792078 72 + 26641161 CCCCGAUGGUGGAAGUUACGUAUGUAGUUCC------CACAUACAUACACUCAUUUGUGUAUCCCACAUCGUCAAUCG ...(((((..(((......((((((......------.)))))).(((((......))))))))..)))))....... ( -20.30, z-score = -2.93, R) >consensus CUCCGAGGGUGGAAGUUACGUAUCUAGUUCC______CACAUACAUACACUCAUUUGUGUAUCCCCCAUCGGCAAUCG ...((((((.(((......((((((.............)))))).(((((......))))))))))).)))....... (-14.24 = -15.50 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:22 2011