| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,750,455 – 4,750,539 |
| Length | 84 |
| Max. P | 0.548686 |
| Location | 4,750,455 – 4,750,539 |
|---|---|
| Length | 84 |
| Sequences | 14 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 75.60 |
| Shannon entropy | 0.54675 |
| G+C content | 0.51207 |
| Mean single sequence MFE | -14.96 |
| Consensus MFE | -8.92 |
| Energy contribution | -9.04 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.68 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4750455 84 - 21146708 UGUCAUAUCCUGUUCC--GUACUUACCGUUCUCAGGAAUGAAACAUCAUCCUGCUCGGAGCCUCCCUCCGCCUCAGCCAUUUCGUU ..((((.(((((...(--(.......))....))))))))).........(((..(((((.....)))))...))).......... ( -16.50, z-score = -1.57, R) >apiMel3.Group2 3441604 67 - 14465785 -------------------UACUCACCGUGCGAAGGAAGGAUACGUCAUCCUGCUCGGAGCCACCCUCGCUGUCGGCCAUCCCGUC -------------------......(((.((((.((.(((((.....)))))((.....))..)).))))...))).......... ( -17.10, z-score = 0.55, R) >anoGam1.chr3L 8410982 66 - 41284009 --------------------ACUUACCGUACGCAAGAAUGAAACAUCAUCCUGCUCGGAUCCUCCCUCUGCUUCAGCCAUGUUGGU --------------------.....(((...(((.((.(((....))))).))).))).................(((.....))) ( -10.40, z-score = 0.23, R) >droGri2.scaffold_15112 3825831 67 - 5172618 -------------------UACUUACCGUUCUCAGGAAUGAGACAUCAUCCUGCUCGGAGCCGCCUUCCGCUUCAGCCAUUUUGCU -------------------.............(((((.(((....))))))))...(((((........)))))(((......))) ( -14.00, z-score = -0.39, R) >droMoj3.scaffold_6496 13109725 84 + 26866924 --UUUUAUGUUUUUUUGAGUACUUACCGUACGCAGGAAUGAAACAUCAUCCUGCUCGGAGCCACCUUCCGCUUCAGCCAUUUUGCC --................((((.....))))((((((.(((....)))))))))..(((((........)))))............ ( -20.30, z-score = -2.50, R) >droWil1.scaffold_180697 1431630 75 + 4168966 -------UCUUGUU----GUACUCACCGUUCUCAGGAAUGAAACAUCAUCCUGCUCGGAGCCACCUUCCGCCUCAGCCAUUUUGUU -------....(((----(......(((....(((((.(((....))))))))..))).((........))..))))......... ( -13.20, z-score = -0.30, R) >droPer1.super_4 5743143 77 + 7162766 ---------CCCGCCCCGUUACUUACCGUUCUAAGGAAUGAGACAUCAUCCUGCUCGGAGCCACCUUCCGCUUCAGCCAUUUCGUU ---------........................((((.(((....)))))))(((.(((((........))))))))......... ( -13.80, z-score = -0.40, R) >dp4.chr3 13899904 77 - 19779522 ---------CCCGCCCCGUUACUUACCGUUCUAAGGAAUGAGACAUCAUCCUGCUCGGAGCCACCUUCCGCUUCAGCCAUUUCGUU ---------........................((((.(((....)))))))(((.(((((........))))))))......... ( -13.80, z-score = -0.40, R) >droAna3.scaffold_13266 18616041 86 + 19884421 UAUUAUAUAGAUAUACCGUUACUUACCGUUCUCAGGAAUGAAACAUCAUCCUGCUCGGAGCCUCCCUCCGCCUCAGCCAUUUCGUU .........((...((.((.....)).))..))((((.(((....)))))))((((((((.....)))))....)))......... ( -12.80, z-score = -0.15, R) >droEre2.scaffold_4929 8740302 86 + 26641161 UGUGAUAUCCUGUUGCUGUUACUUACCGUUCUCAGGAAUGAAACAUCAUCCUGCUCGGAGCCUCCCUCCGCCUCAGCCAUUUCGUU ...((....(((..((................(((((.(((....))))))))...((((.....))))))..))).....))... ( -17.30, z-score = -0.76, R) >droYak2.chr2L 17409109 79 - 22324452 --CUUUAU-----UACCGUUACUUACCGUUCUCAGGAAUGAAACAUCAUCCUGCUCGGAGCCUCCCUCCGCCUCAGCCAUUUCGUU --......-----....(((............(((((.(((....))))))))..(((((.....)))))....)))......... ( -12.80, z-score = -0.91, R) >droSec1.super_1 2388336 84 - 14215200 UGUGAUAUCCUGUUCC--GUACUUACCGUUCUCAGGAAUGAAACAUCAUCCUGUUCGGAGCCUCCCUCCGCCUCAGCCAUUUCGUU .......(((((...(--(.......))....)))))((((((.......(((..(((((.....)))))...)))...)))))). ( -15.60, z-score = -0.73, R) >droSim1.chr2R 3427359 84 - 19596830 UGUGAUAUCCUGUUCC--GUACUUACCGUUCUCAGGAAUGAAACAUCAUCCUGCUCGGAGCCUCCCUCCGCCUCAGCCAUUUCGUU .......(((((...(--(.......))....)))))((((((.......(((..(((((.....)))))...)))...)))))). ( -14.90, z-score = -0.35, R) >triCas2.ChLG3 11653409 82 + 32080666 --UUGUUUACUAACCUCAAGACUCACCGUUCGCAAGAAUGAAACAUCAUCCUGUUCGGAGCCCCCUUCGGCCUCCGCCAUUCUG-- --.(((((.((.......))......(((((....))))))))))..........(((((((......)).)))))........-- ( -16.90, z-score = -1.90, R) >consensus __U__UAU_CUGUUCC__GUACUUACCGUUCUCAGGAAUGAAACAUCAUCCUGCUCGGAGCCUCCCUCCGCCUCAGCCAUUUCGUU .................................((((.(((....)))))))((((((((.....)))))....)))......... ( -8.92 = -9.04 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:05 2011