| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,741,323 – 4,741,381 |
| Length | 58 |
| Max. P | 0.663232 |
| Location | 4,741,323 – 4,741,381 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 92.32 |
| Shannon entropy | 0.15503 |
| G+C content | 0.48379 |
| Mean single sequence MFE | -11.34 |
| Consensus MFE | -10.34 |
| Energy contribution | -10.36 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663232 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4741323 58 + 21146708 CAUAAACAGUUUU-CAUUUGCCACUCGUCGCAGCUCAGCGAGCGUGACAUACCAAUCCU .............-............(((((.((((...)))))))))........... ( -11.30, z-score = -1.63, R) >droWil1.scaffold_180697 1418972 55 - 4168966 CAUAAAGUGUCUUACACUUGGC----GUCUCAGUUCAGCGAGCGUGACAUGGCAAUCUU ....(((((.....)))))(.(----((.(((((((...)))).))).))).)...... ( -11.60, z-score = -0.16, R) >droAna3.scaffold_13266 18607370 58 - 19884421 CAUAAACAGUUUU-CAUUUGCCACUCGUCGCAGCUCAGCGAGCGUGACAUGCCAAUCCU .............-............(((((.((((...)))))))))........... ( -11.30, z-score = -0.67, R) >droEre2.scaffold_4929 8731216 58 - 26641161 CAUAAACAGUUUU-CAUUUGCCACUCGUCGCAGCUCAGCGAGCGUGACAUACCAAUCCU .............-............(((((.((((...)))))))))........... ( -11.30, z-score = -1.63, R) >droYak2.chr2L 17399307 58 + 22324452 CAUAAACAGUUUU-CAUUUGCCACUCGUCGCAGCUCAGCGAGCGUGACAUACCAAUCCU .............-............(((((.((((...)))))))))........... ( -11.30, z-score = -1.63, R) >droSec1.super_1 2379107 58 + 14215200 CAUAAACAGUUUU-CAUUUGCCACUCGUCGCAGCUCAGCGAGCGUGACAUACCAAUCCU .............-............(((((.((((...)))))))))........... ( -11.30, z-score = -1.63, R) >droSim1.chr2R 3418121 58 + 19596830 CAUAAACAGUUUU-CAUUUGCCACUCGUCGCAGCUCAGCGAGCGUGACAUACCAAUCCU .............-............(((((.((((...)))))))))........... ( -11.30, z-score = -1.63, R) >consensus CAUAAACAGUUUU_CAUUUGCCACUCGUCGCAGCUCAGCGAGCGUGACAUACCAAUCCU ..........................(((((.((((...)))))))))........... (-10.34 = -10.36 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:04 2011